1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagatgcgcctttctattcctttgaactgaggtcgtctcatgtattcagaaatctagtctgattcagcgtctacagGATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTTCCAAAGGCATGCAAGGGGAAGCACCTAGCAATTGCTCAGGAGACGAAAG
species | Zea mays |
transcript | GRMZM2G011233_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCATCGGTTTGTACCTTGGGTGGTGGTCAACGGCAAACCGCTCGGTGAT GATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTTEST: gi|94472197|gb|EB701155.1|EB701155
genomic: CTCATCGGTTTGTACCTTGGGTGGTCGTCAACGGCAAACCGCTCGGTGATgtaagatgcg ... gcgtctacagGATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTT
EST: CTCATCGGTTTGTACCTTGGGTGGTCGTCAACGGCAAACCGCTCGGTGAT GATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTT
genomic: CTCATCGGTTTGTACCTTGGGTGGTCGTCAACGGCAAACCGCTCGGTGATgtaagatgcg ... gcgtctacagGATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTT
ttgaactgaggtcgtctcatgtattcagaaatctagtctgattcagcgtctacagGATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTTCCAAAGGCATGCAAGGGGAAGCACCTAGCAATTGCTCAGGAGACGAAAG
gtctgat putative branch site (score: 5)
atgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatgcgcctttctattcctttgaactgaggtcgtctcatgtattcagaaatctagtctgattcagcgtctacagGATTACATGAACTTTGAGGCATACATCTGCAGCGCTTATGACGGCAAGCTTCCAAAGGCATGCAAGGGGAAGCACCTAGCAATTGCTCAGGAGACGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA