1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtttgatttttttttacagaaaaattaaaatagacttagtaacttacatgactagtattttgttgacgatctatttgctaaccttgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAG
species | Zea mays |
transcript | GRMZM2G011136_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|71767791|gb|DR965728.1|DR965728
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|211454006|gb|FL153959.1|FL153959
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|71445898|gb|DR826948.1|DR826948
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|211454007|gb|FL153960.1|FL153960
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACGAGAAGTTGTTGACAAEST: gi|5325032|gb|AI783223.1|AI783223
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAA
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|32931583|gb|CF036395.1|CF036395
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|13559022|gb|BG550377.1|BG550377
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTCGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATEST: gi|5846844|gb|AI999927.1|AI999927
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
EST: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAG CTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
genomic: AATCTGGAAAATATTTGTTGAATCTTCCGATCAAAGTTGATGAATCTAAGgtttgatttt ... tgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAAT
taacttacatgactagtattttgttgacgatctatttgctaaccttgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAG
tgctaac putative branch site (score: 211)
tagtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgatttttttttacagaaaaattaaaatagacttagtaacttacatgactagtattttgttgacgatctatttgctaaccttgaaatgcagCTAGACAAGAAGTTGTTGACAAAATATTTTAAAGAGCACCCACATGACAATCTACCAGAGTTTTCAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA