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gtagtaaactgcatccaatccaatacaagacactagcaccctgttcttgacgggtttttgtggaaattgtctttggtctaacatactatggcgcaaaacttctagtagaaattgctgcgtaccttgtatattgcaccagttttgttggttcctccgctaaacctgtctctgctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
species | Zea mays |
transcript | GRMZM2G011078_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGCACGAGEST: gi|76280658|gb|DV020226.1|DV020226
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGCACGAGEST: gi|71440939|gb|DR821989.1|DR821989
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGGCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGGACGAGEST: gi|76282431|gb|DV021999.1|DV021999
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGCACGAGEST: gi|78092064|gb|DV520438.1|DV520438
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGCACGAGEST: gi|89760517|gb|DY688893.1|DY688893
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGCACGAGEST: gi|78080153|gb|DV508565.1|DV508565
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAGGATGCTGCGGCACGAGEST: gi|76928466|gb|DV171634.1|DV171634
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
EST: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAG GAAATAAAAAGGCGAGAAGATGCTGCGGCACGAG
genomic: GGGAGAAGGAGCTTCTGGCCAAGGAGGCCGAGCTGAACAGGCGTGAGAAGgtagtaaact ... ctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
tatattgcaccagttttgttggttcctccgctaaacctgtctctgctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
cgctaaa putative branch site (score: 3)
cctgtctctgctcc CT-rich tract
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaaactgcatccaatccaatacaagacactagcaccctgttcttgacgggtttttgtggaaattgtctttggtctaacatactatggcgcaaaacttctagtagaaattgctgcgtaccttgtatattgcaccagttttgttggttcctccgctaaacctgtctctgctccatgtagGAAATAAAAAGGCGAGAGGATGCTGCGGCACGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC