1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattacaaacacaatgcaacgtattaacactttcgtttatattgctgatacttggacttcaactaattggcatttcctttcgttaccaaagCATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAGACTACGGAGGAGGAACAAATGCATAGTGCTATTGGCAGCTGGCCTGGCA
species | Zea mays |
transcript | GRMZM2G010306_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGCTCCGGAGATCGGCAATGCTTCATGCAGCTTCTATTTGCACACACTTG CATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAGEST: gi|71309875|gb|DR791221.1|DR791221
genomic: AGCTCCGGAGATCGGCAATGCTTCATGCAGCTTCTATTTGCACACACTTGgtattacaaa ... gttaccaaagCATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAG
EST: TGCACACACTTG CATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAG
genomic: TGCACACACTTGgtattacaaa ... gttaccaaagCATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAG
ttatattgctgatacttggacttcaactaattggcatttcctttcgttaccaaagCATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAGACTACGGAGGAGGAACAAATGCATAGTGCTATTGGCAGCTGGCCTGGCA
aactaat putative branch site (score: 5)
tttcctttcgttacc putative PPT
aactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattacaaacacaatgcaacgtattaacactttcgtttatattgctgatacttggacttcaactaattggcatttcctttcgttaccaaagCATGCATTACTTGATGGATCTGCTGATCCAGATCCAGAAATATGGGGGAAGACTACGGAGGAGGAACAAATGCATAGTGCTATTGGCAGCTGGCCTGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG