1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatagctccactccacacggcttgtttcgaattttgatatcacaaacgctgagttctgacgaaaccgttggacgttccagGCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTTCAGTTCACCGCCGAATCAGCTCGGCGCTCGAAGATATAACAGATTATAT
species | Zea mays |
transcript | GRMZM2G009223_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACGCGCTCGGGGCCGCCATCGCCATCCTCGGAACCTTCATCTACTCCCAG GCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTTEST: gi|78092781|gb|DV521155.1|DV521155
genomic: ACGCGCTCGGGGCCGCCATCGCCATCCTCGGAACCTTCATCTACTCCCAGgtaatagctc ... gacgttccagGCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTT
EST: ACGCGCTCGGGGCCGCCATCGCCATCCTCGGAACCTTCATCTACTCCCAG GCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTTEST: gi|211236187|gb|FL162467.1|FL162467
genomic: ACGCGCTCGGGGCCGCCATCGCCATCCTCGGAACCTTCATCTACTCCCAGgtaatagctc ... gacgttccagGCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTT
EST: ACGCGCTCGGGGCCGCCATCGCCATCCTCGGAACCTTCATCTACTCCCAG GCCAAGCAGTAGCCGCCCTTGGS-CGCGCGTCTGGCTCTCAGGCCTCAGTT
genomic: ACGCGCTCGGGGCCGCCATCGCCATCCTCGGAACCTTCATCTACTCCCAGgtaatagctc ... gacgttccagGCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTT
ttcgaattttgatatcacaaacgctgagttctgacgaaaccgttggacgttccagGCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTTCAGTTCACCGCCGAATCAGCTCGGCGCTCGAAGATATAACAGATTATAT
ttctgac putative branch site (score: 76)
attttgatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatagctccactccacacggcttgtttcgaattttgatatcacaaacgctgagttctgacgaaaccgttggacgttccagGCCAAGCAGTAGCCGCCCTTGGCGCGCGCGTCTGGCTCTCAGGCCTCAGTTCAGTTCACCGCCGAATCAGCTCGGCGCTCGAAGATATAACAGATTATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA