1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatccgacacattctacttatgttaataagtaattttccttggcattactttctgtagtcataattcccaacttccatagatatgttattcgtttgaactctattgagttttacttaactttcaaacagTTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGATGCTGGGCGGATTGGTCGTTTAGTTTTGCCAAAGAAGTGTGCTGAG
species | Zea mays |
transcript | GRMZM2G008356_T01 |
intron # | 4 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: CGCTATTGGCCTAGAATAACAGATCAAGAGCTACAACACTTATCTAGCGA TTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGAEST: gi|31348749|gb|CD433106.1|CD433106
genomic: CGCTATTGGCCTAGAATAACAGATCAAGAGCTACAACACTTATCTAGCGAgtatccgaca ... tttcaaacagTTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGA
EST: CGCTATTGGCCTAGAATAACAGATCAAGAGCTACAACACTTATCTAGCGA TTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGA
genomic: CGCTATTGGCCTAGAATAACAGATCAAGAGCTACAACACTTATCTAGCGAgtatccgaca ... tttcaaacagTTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGA
ccatagatatgttattcgtttgaactctattgagttttacttaactttcaaacagTTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGATGCTGGGCGGATTGGTCGTTTAGTTTTGCCAAAGAAGTGTGCTGAG
ttacttaac putative branch site
ctttc putative PPT
ttttacttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccgacacattctacttatgttaataagtaattttccttggcattactttctgtagtcataattcccaacttccatagatatgttattcgtttgaactctattgagttttacttaactttcaaacagTTCAAATTCTGTTATTACTCCTTTGTTTGAAAAGATGCTAAGTGCTAGTGATGCTGGGCGGATTGGTCGTTTAGTTTTGCCAAAGAAGTGTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT