1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacatttgttatgctctaacttgagaaagggagtctgaattgtcctgttagggaaaaaaatattgtgagggatgccaaagttatggattcccacaatttttacccgaataacgtaaccttttgctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGTATTCCACACCAGTTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAA
species | Zea mays |
transcript | GRMZM2G008327_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|17921690|gb|BM259341.1|BM259341
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAAEST: gi|60394106|gb|DN226976.1|DN226976
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAA
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|87152029|gb|DY396818.1|DY396818
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|76017100|gb|DT944270.1|DT944270
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|5525740|gb|AI861633.1|AI861633
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: AATTCCTGTCCGT-CATTTACTCATGAG GTAGTGCCATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|76017014|gb|DT944184.1|DT944184
genomic: AATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|211200718|gb|FL344211.1|FL344211
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|149096226|gb|EE181929.2|EE181929
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|18171336|gb|BM341176.1|BM341176
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|60394498|gb|DN227368.1|DN227368
genomic: TCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|31362736|gb|CD447093.1|CD447093
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|60345525|gb|DN212498.1|DN212498
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: ATTTGGAATTCCTGTCCAGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTATGCTTGGAGCGCGGCAGEST: gi|60346409|gb|DN213382.1|DN213382
genomic: ATTTGGAATTCCTGTCC-GTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|7216555|gb|AW562677.1|AW562677
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGAGGCAGEST: gi|86470531|gb|DY236901.1|DY236901
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|148933262|gb|EC876914.2|EC876914
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGGGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|211484592|gb|FL266361.1|FL266361
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: GGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|60397309|gb|DN230125.1|DN230125
genomic: GGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|4966783|gb|AI691639.1|AI691639
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTTACTCAT-AG GTAGTG-CATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGAGGCAGEST: gi|50337361|gb|CO532487.1|CO532487
genomic: TTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|71768728|gb|DR966665.1|DR966665
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|5739730|gb|AI947306.1|AI947306
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|61118625|gb|DN559586.1|DN559586
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: CTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|17930906|gb|BM267866.1|BM267866
genomic: CTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: CAGGGCATTT-GAATTTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|17930325|gb|BM267285.1|BM267285
genomic: CAGGGCATTTGGAA-TTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|93281356|gb|EB673620.1|EB673620
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|6526696|gb|AW215985.1|AW215985
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGEST: gi|18163033|gb|BM332872.1|BM332872
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
EST: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAG GTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
genomic: TTGGTTTAGCCAGGGCATTTGGAATTCCTGTCCGTACATTTACTCATGAGgtacatttgt ... tatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAG
ctgtatattctagtcacattaattcacagtacatatctatggaagtatttttcagGTAGTGACATTATGGTACAGAGCTCCAGAAATTCTGCTTGGAGCGCGGCAGTATTCCACACCAGTTGATGTGTGGTCTGTGGGCTGTATCTTTGCGGAAA
cattaat putative branch site (score: 85)
tatttttc putative PPT
aagtattttt TA-rich tract