Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA

Basic information

species Zea mays
transcript GRMZM2G008216_T03
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os07g14150.6 (Oryza sativa), 3'ss of exon 3
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
||  | ||    |  || |  ||    || |||  | || |   ||| |||  | || |      ||    | |  |||  | || ||   | |||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
gtctgcacccgtcaattttc-cta--cgcataacctcatcacaaatatctgacgatttt-----atttaacacaactgctaattcttc--actacagAGGCTGGTGTATGGAGCCAAGGCAGAAGCTGCCATTGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTTTACCAGAAGGCCA

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA15G20970.2 (Glycine max), 3'ss of exon 4
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagct---ggagcttatt-----gagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
 ||   |  |  || |   ||  || | | | |||  |||||   ||  |      ||||| |     |     | ||| |  ||    |||    ||  |  ||||| |||||||||| || ||||||||||| || || || |||||||| |||||||||||| |||||||  || |||||||||| ||||||||||| ||  
atttaaaaat--ctttaaagatagagtacatgaaa--attaaatttattttacaatgcttactctcgggcacactttcttacaatattcactttatttata-tagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCAGAAAGCAC

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G09440.1 (Glycine max), 3'ss of exon 4
-gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagt--gttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACT-TCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
  ||  ||||| |      |||    |   || |  |||  ||    ||||      | ||| |     | |||   ||  |  |      ||   | ||||| |||||||||| || ||||||||||| || || || |||||||| ||||||| | ||| |||||||  || |||| ||||| ||||| ||||| ||  
tttttatacttaaaatacatgaaaattaaacttatttgacaaattgaagcttattacttttgggcccactttcttgtcacactcaaattattttttatagAGGTTGGTTTATGGAGCGAAGGCAGAGGCAGCAATTGCTATTGGATTCGATGACTATGATTTCAGATGCATTGCGAGGTACTGGATTCTATCAGAAAGCA-

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA16G22830.1 (Glycine max), 3'ss of exon 8
gttcgta---ctttactgttctgactgattgc--ctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
 ||   |   |||||  | |       ||      |||| | |||   ||  |||    ||    |    || ||| |  ||    |||    ||  |  ||||| |||||||||| || |||||||||||||| || || |||||||| |||||||||||| |||||||  || |||||||||| ||||||| ||| ||  
atttaaaaatctttaaagatagagtacatgaaaattaaattcattttacaatgcttactctcgg-gcacattttcttacaatattcactttatttata-tagAGGTTGGTTTATGGAGCAAAGGCAGAGGCTGCAATTGCTATTGGATTCGATGACTTCATTTCAGATGCATTGCGAGGCACTGGATTCTACCTGAAAGCAC

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G12900.1 (Glycine max), 3'ss of exon 2
-gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctac----tcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
  ||   |   |       | | | ||     |  |  ||| |   ||  |     | ||| | | |||   | || |   |||    |    ||   ||||||| |||||||||| || ||||||||||| || || || ||| | || |||||||||||| |||||||  || |||| ||||  ||||| ||||||||  
atttaagataatttctaattaattaatattacatcaaaattgaat-tattttacaatgatt-acttttgggcacacttttttacaatattaaatttatacagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTAGGTTCGATGACTTCATTTCAGATGCATTGCGAGGTACTGCATTCTATCAGAAGGCAC

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA20G37210.1 (Glycine max), 3'ss of exon 4
----gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgca----acagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
    |    | |   |        | | ||    |    | |  |    |  ||  ||  | |       ||   | |  ||   | |||| |  ||    |||||| |||||||| || || || ||||| ||||| || || |||||||||||||| |||||||| ||||| ||||| |||||||| || || ||||||||  
gtgagcctctgccacagccacactattcatattttcctctcaccacatgtttctctagtatttattaaaatgatcacat-tgttcattcctttcacatcaaacagAGACTGGTTTACGGAGCTAAAGCAGAAGCTGCAATAGCAATTGGATTTGATGATTTCATTGCCGATGCACTGAGGGGCACTGGTTTTTATCAGAAGGCTC

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA17G04720.2 (Glycine max), 3'ss of exon 4
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
||| | | |    |||| |  ||   || ||    |  |  | |||   |  | | | ||    | |  || |  |    || || | ||  |||||||| |||||||||| || ||||| ||||| || || || ||||| |||||||| |||||||||||||| ||| |||| ||||| ||||| ||||| || |
gttag-aatggcttgttatccctatgtgtctc---ttttataccatgttt--atcctgtttctagctaacttattacat-tattctttttctaacagAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCTATTGGGTTTGATGATTTCATTGCAGATGCACTGCGAGGTACTGGATTCTATCAGAAAGCAA

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G09430.2 (Glycine max), 3'ss of exon 3
gttcgtactttactgttctgactgattgcctaaaatgat-taagcatagctggagcttat--tgagtgttgtctaaacatgcctactcc---tcttgca-----acagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
        ||||   |  |  || |||   ||| || |  | |  || |    |  |||   ||| |  | | |   || || | ||     | ||  |     ||||||| |||||||||| || ||||||||||| || || || ||||| || |||||||||||| |||||||  || |||| ||||| ||||| ||||||||  
-------atttaagataatttctaattaattaatattacatcaaaattgaattattttacaatgattact-tttgggcacgctttcttacaatattaaatttatacagAGGTTGGTTTATGGAGCAAAGGCAGAGGCAGCAATTGCTATTGGGTTCGATGACTTCATTTCAGATGCATTGCGAGGTACTGGATTCTATCAGAAGGCAC

upper sequence: GRMZM2G008216_T02 (Zea mays), 3'ss of exon 1
lower sequence: AT5G28050.2 (Arabidopsis thaliana), 3'ss of exon 5
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
    |||   |   |     | |     |  |||   ||    | ||       | | |       ||  ||  |||| || || ||  |  |||||||| |||||||||| ||||| || || || || || ||||| || |||||||||||||| || |||||| |||||||||| ||| | ||||||||  | |
----gtaagatgtcgaaacaagtctactcacaaacccatctttc-taatcatttcatttatcacaatgagtactcatgtct-ctacttgta-aacagAGGTTGGTTTATGGAGCCAAAGCCGAAGCAGCTATAGCCATCGGGTTTGATGACTTCATAGCTGATGCTTTGAGAGGCACGGGGGTTTACCAGAAATCTA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22489218|gb|BU049141.1|BU049141
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|37382209|gb|CF628040.1|CF628040
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|31355290|gb|CD439647.1|CD439647
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211064651|gb|FL344071.1|FL344071
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGANGCTGCCATCGCCATTGGAATTTGA
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGA-TTTGA
EST: gi|40303146|gb|CK347533.1|CK347533
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211307979|gb|FL325109.1|FL325109
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGC-ATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|32919559|gb|CF024371.1|CF024371
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|32864296|gb|CF003978.1|CF003978
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|60672710|gb|DN475402.1|DN475402
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCGTTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|14202574|gb|BG836251.1|BG836251
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211362159|gb|FL445525.1|FL445525
EST:     GCGAGCCATGCCCAATGTGCTTTAGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211098107|gb|FL309374.1|FL309374
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|213170657|gb|FM180845.1|FM180845
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211277751|gb|FL328165.1|FL328165
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGG
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGG
EST: gi|17921800|gb|BM259451.1|BM259451
EST:     CCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: CCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|28984685|gb|BQ539196.2|BQ539196
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211296213|gb|FL367911.1|FL367911
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211531451|gb|FL327591.1|FL327591
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|32912522|gb|CF017334.1|CF017334
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211027221|gb|FL160174.1|FL160174
EST:     GCGAGCCATGCCCAATGTGCTTTAGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGANTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|32919706|gb|CF024518.1|CF024518
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|32919726|gb|CF024538.1|CF024538
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|32919530|gb|CF024342.1|CF024342
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211031209|gb|FL344489.1|FL344489
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211056302|gb|FL363850.1|FL363850
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211416918|gb|FL328810.1|FL328810
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAAGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211337664|gb|FL335752.1|FL335752
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|17921473|gb|BM259124.1|BM259124
EST:     CCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: CCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211105517|gb|FL308951.1|FL308951
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|14244363|gb|BG842416.2|BG842416
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|60672650|gb|DN475348.1|DN475348
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCGTTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211520559|gb|FL367148.1|FL367148
EST:     GCGAGCCATGCCTAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTAT
EST: gi|211528169|gb|FL316556.1|FL316556
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGCGCCAAGGCAGAGGCTGCCATCG
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCG
EST: gi|6012424|gb|AW061861.1|AW061861
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211103564|gb|FL331642.1|FL331642
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211038078|gb|FL325411.1|FL325411
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211152887|gb|FL357748.1|FL357748
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|60356864|gb|DN223837.1|DN223837
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|37394241|gb|CF634392.1|CF634392
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|87298774|gb|DY470777.1|DY470777
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|211375427|gb|FL332804.1|FL332804
EST:     GCGAGCTATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGG
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGG
EST: gi|24769870|gb|CA404999.1|CA404999
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
EST: gi|47961715|gb|CN844424.1|CN844424
EST:     GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAG                         AGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT
genomic: GCGAGCCATGCCCAATGTGCTTTGGTGCAGTTCATCTCTCCCGAATCAAGgttcgtactt ... cttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA
                         gtctaaa  putative branch site (score: 3)
                                  tgcctactcctctt  putative PPT
             ttattga  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcgtactttactgttctgactgattgcctaaaatgattaagcatagctggagcttattgagtgttgtctaaacatgcctactcctcttgcaacagAGGCTGGTTTATGGGGCCAAGGCAGAGGCTGCCATCGCCATTGGATTTGATGACTTCATTGCAGATGCTCTGAGAGGCACTGGGTTCTACCAGAAGGCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG