1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttctcagctcattcctttactgtaatttcaagtaatgttcaaattagtatatgcatttgacttctgaaacatctgtttgtatctttgttatgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAAG
species | Zea mays |
transcript | GRMZM2G008209_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|211537799|gb|FL107888.1|FL107888
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACEST: gi|71437508|gb|DR818558.1|DR818558
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTAC
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|71318841|gb|DR796181.1|DR796181
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|76014964|gb|DT942134.1|DT942134
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|74246159|gb|DT654073.1|DT654073
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|89761605|gb|DY689549.1|DY689549
genomic: GACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|71307844|gb|DR790143.1|DR790143
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|89757275|gb|DY686946.1|DY686946
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|148936771|gb|EC880907.2|EC880907
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAEST: gi|78118463|gb|DV536848.1|DV536848
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
EST: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAG TTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
genomic: GGATTCCTTTCTCGATCTTTTTGAGCTCGGGGAAGACTCAGAGATCCAAGgtttggagac ... tgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGA
agtatatgcatttgacttctgaaacatctgtttgtatctttgttatgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAAG
atttgac putative branch site (score: 24)
tttgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctcagctcattcctttactgtaatttcaagtaatgttcaaattagtatatgcatttgacttctgaaacatctgtttgtatctttgttatgcatctcagTTCCACAGTCTCATTCATCGGTGGTCAAGGCAGCAATTAGCAATTACCGGAAG
- - - - -cattcct
- - - - - - - - - - - - - - - - - - - - - - - - - atgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgt