Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatacagaatgctttgttttggtcaggtacttctttcatgtgtgagtacttttgtatgctatcactagttgttaagttgattattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT

Basic information

species Zea mays
transcript GRMZM2G007300_T02
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g62244.3 (Oryza sativa), 3'ss of exon 2
--gatacagaatgctttgttttggtcaggtacttctttcatgtgtgagtacttttgtatgctatcactagttgttaagttgattattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT
    |  |   |   | | |||    | |||    |||  |   ||  || |  |  ||  |     |  |||| |  || || | |||| ||||||| |||||||| ||||||||||||||||| || || ||||| ||| |||||||||| || ||  ||||||| ||||| ||||||
tatgtttatcttctctagctttttgtaagtagccattttttac-tgtctaatcat-catattcctgattcttgtaattttaatgagtgttttccatttacagGTTGAGAGCATAGTTCTGAGCATCATTTCGATGCTTTCTGGTCCAAATGATGAATCACCAGCAAATATTGAAGCAGCT

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 4
lower sequence: AT3G46460.1 (Arabidopsis thaliana), 3'ss of exon 4
--------------gatacagaatgct--ttgttttggtcaggtacttctttcatgtgtgagtacttttgtatgctatcactagttgttaagttgat-tattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT
              ||| ||  || ||  |||| |       |     |||     | | |  |    || |||  |     | ||| | ||| ||  ||   ||    |||| |||||||| || ||  |  |||| |||||||||||||||||| |||| || ||||| ||| |||||||| ||||||| |||
gtacgttttacaatgatccaacattctccttgtatgatatctgagaagcttcttcttataaccaagaatg-atgtcaattagatttgatgagtggaaataacattgctgattt-cagGTTGAGAGTATCATGTTGAGTATTATATCAATGCTCTCTGGTCCCAACGACGAATCTCCAGCAAACGTTGAGGCTGCT

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv08s0007g00120.t01 (Vitis vinifera), 3'ss of exon 4
gatacagaatgctttgttttggtcag-gtacttctttcatgtgtgagtactttt--gtatgctatcactagttgttaagttgattattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT
   | |  || || | | ||  |  |  ||||    |||  | ||| | | |||  ||||    |   |   | |||        || ||  | ||  |||||||||||||||||||| |||| || ||||||||||| || ||||||||||| || ||| | ||||| ||||| || |||
-gaaaaagatactgtatattatttggcatactgacatcacttttgattcccttttggtatttgctttttgacttttattactgggatggt--ttcacatgcagGTTGAAAGCATAGTTTTGAGTATCATATCAATGCTTTCAAGTCCAAATGATGAATCTCCTGCAAATATTGAAGCTGCT

upper sequence: GRMZM2G007300_T02 (Zea mays), 3'ss of exon 4
lower sequence: Vv13s0019g00910.t01 (Vitis vinifera), 3'ss of exon 4
-gatacagaatgctttgttttggtcaggtacttctttcatgtgtgagtacttttgtatgctatcactagttgttaagttgattattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT
   | |  |||    |  | || | |  |     |||      |   |   |    ||  |||  ||| || | ||  | | ||| |||    |||| |||||||||||||||||  | || || ||||||||||| || ||||| |||||||| ||| | |||||  |||| || |||
ctttgctcaattaagttgtgtgattatttgtggtttttcctcctctctttctcgtaattttatgtctatttatgaaactaactatggtt-ctaattttcagGTTGAAAGCATAGTCTTAAGTATAATATCAATGCTGTCAAGTCCTAATGACGAATCTCCCGCAAATGTTGAAGCTGCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14548374|gb|BI096718.1|BI096718
EST:     TCCAAGTGGTTATTGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCA
genomic: TCCAAGTGGTTAT-GAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCA
EST: gi|4967158|gb|AI692076.1|AI692076
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|116815280|gb|EC857946.1|EC857946
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365067|gb|FL116005.1|FL116005
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGC
EST: gi|211372793|gb|FL445592.1|FL445592
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365064|gb|FL116002.1|FL116002
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|8273196|gb|BE012285.1|BE012285
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|4887473|gb|AI677572.1|AI677572
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|60348385|gb|DN215358.1|DN215358
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|50334256|gb|CO529382.1|CO529382
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|32858948|gb|CD998629.1|CD998629
EST:     GTCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|67023819|gb|CO452568.1|CO452568
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|60359320|gb|DN226293.1|DN226293
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTTTGAGCATTATATCAATGCTCTTTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|32863929|gb|CF003611.1|CF003611
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|60349828|gb|DN216801.1|DN216801
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|33093470|gb|CF053464.1|CF053464
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|116825457|gb|EC869181.1|EC869181
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365065|gb|FL116003.1|FL116003
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|32910629|gb|CF015441.1|CF015441
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|60341687|gb|DN208660.1|DN208660
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|32863732|gb|CF003414.1|CF003414
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|87153235|gb|DY398024.1|DY398024
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|19822690|gb|BQ048714.1|BQ048714
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|18450508|gb|BM428786.1|BM428786
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|50334257|gb|CO529383.1|CO529383
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211530486|gb|FK952738.1|FK952738
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|32909923|gb|CF014735.1|CF014735
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|6012446|gb|AW061883.1|AW061883
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTNTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|84980854|gb|DW531203.1|DW531203
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|16920121|gb|BM074510.1|BM074510
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|6021313|gb|AW066241.1|AW066241
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCCTCCTAAGTCCAAAT
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTC-TC-TA-GTCCAAAT
EST: gi|67022558|gb|CO451307.1|CO451307
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365074|gb|FL116012.1|FL116012
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTG
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTG
EST: gi|32913813|gb|CF018625.1|CF018625
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|83278514|gb|DV942522.1|DV942522
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|84980470|gb|DW530819.1|DW530819
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|60342711|gb|DN209684.1|DN209684
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|84980533|gb|DW530882.1|DW530882
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365075|gb|FL116013.1|FL116013
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTA
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTA
EST: gi|32863930|gb|CF003612.1|CF003612
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|116814603|gb|EC857188.1|EC857188
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211533492|gb|FK952752.1|FK952752
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTMTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365077|gb|FL116015.1|FL116015
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|33096528|gb|CF056522.1|CF056522
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211362422|gb|FL116000.1|FL116000
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCA
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCA
EST: gi|18450509|gb|BM428787.1|BM428787
EST:     ATCCAAG-GGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|88753890|gb|DY538031.1|DY538031
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTTTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|14203751|gb|BG837428.1|BG837428
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211530488|gb|FK952740.1|FK952740
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|211365073|gb|FL116011.1|FL116011
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTA
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTA
EST: gi|211365066|gb|FL116004.1|FL116004
EST:     ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGAC
EST: gi|116824917|gb|EC868582.1|EC868582
EST:     ATCCCAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACA                         GTTGAAAGCATAGTTCTGAGCATTATATCGATGCTCTC
genomic: ATCCAAGTGGTTATGAGCTCGCAAGTGAGCGTTGGACACCTGTGCATACAgtatggcttt ... ccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacttttgtatgctatcactagttgttaagttgattattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT
                             agttgat  putative branch site (score: 5)
                                            tccattt  putative PPT
                          ttaagttgattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatacagaatgctttgttttggtcaggtacttctttcatgtgtgagtacttttgtatgctatcactagttgttaagttgattattgttatccatttgcagGTTGAAAGCATAGTTCTGAGCATTATATCAATGCTCTCTAGTCCAAATGACGAGTCTGCAGCAAACATTGAGGCAGCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT