1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtattggccacaccagttccaaaaggtggatttgggtcatccgtactcttctccaatgtaccaaatgccgtactaatttgttgttgtcttctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG
species | Zea mays |
transcript | GRMZM2G007260_T03 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|18179315|gb|BM380525.1|BM380525
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTTTGAAGCAGCCEST: gi|20803162|gb|BQ294212.1|BQ294212
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCEST: gi|211160852|gb|FL355935.1|FL355935
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCGEST: gi|37377294|gb|CF625238.1|CF625238
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|211158663|gb|FL318093.1|FL318093
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|113703398|gb|EE680902.1|EE680902
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|94474209|gb|EB703167.1|EB703167
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|89759914|gb|DY688576.1|DY688576
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|74241480|gb|DT649394.1|DT649394
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCANACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|50332498|gb|CO527624.1|CO527624
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTTTGAAGCAGCCEST: gi|74241479|gb|DT649393.1|DT649393
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|44900351|gb|CK826896.1|CK826896
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|4624364|gb|AI615197.1|AI615197
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|71299516|gb|DR785767.1|DR785767
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|7031256|gb|AW461144.1|AW461144
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|32857587|gb|CD997268.1|CD997268
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|71299514|gb|DR785766.1|DR785766
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTTTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTTTCCTGCCAATTTTGAAGCAGCCEST: gi|211209634|gb|FL170002.1|FL170002
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACEST: gi|149112233|gb|EE191289.2|EE191289
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAAC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|60401065|gb|DN233872.1|DN233872
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|12972475|gb|BG268000.1|BG268000
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|148966066|gb|EE017005.2|EE017005
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|211212200|gb|FL170016.1|FL170016
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|18168064|gb|BM337904.1|BM337904
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|78122431|gb|DV540815.1|DV540815
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|94474208|gb|EB703166.1|EB703166
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|13149803|gb|BG320125.1|BG320125
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|40337033|gb|CK371103.1|CK371103
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|149112232|gb|EE191288.2|EE191288
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|32857308|gb|CD996989.1|CD996989
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|37397476|gb|CF636037.1|CF636037
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|18168754|gb|BM338594.1|BM338594
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|211209644|gb|FL170012.1|FL170012
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCCATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|50332499|gb|CO527625.1|CO527625
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCEST: gi|211500859|gb|FL344778.1|FL344778
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
EST: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAG TCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
genomic: ACCAGTGGAGTCCTATATACGATGTTGCGGCAATATTGACCTCTATTCAGgtattgctca ... ctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCC
ctcttctccaatgtaccaaatgccgtactaatttgttgttgtcttctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG
tactaat putative branch site (score: 1)
ttgttgtcttctcttt putative PPT
tactaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattggccacaccagttccaaaaggtggatttgggtcatccgtactcttctccaatgtaccaaatgccgtactaatttgttgttgtcttctctttgcagTCCCTGCTGTGTGACCCAAACCCAAATTCTCCTGCCAACTCTGAAGCAGCCAGAATGTTCAGCGAGAACAAGCGTGAGTACAACCGCAAAGTTCGTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG