1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagccacgccacttcttgccatgtctccacattcctctctgcatgcacattcagacgcgcgtctcatggtttcggatcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCATAGTCCAG
species | Zea mays |
transcript | GRMZM2G006480_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCEST: gi|67020982|gb|CO449731.1|CO449731
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: CGGCGCGTTCAAGCAT GTCAGGGCTGCGACCGACATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCEST: gi|86473866|gb|DY240236.1|DY240236
genomic: CGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCEST: gi|76289527|gb|DV029095.1|DV029095
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCEST: gi|78089839|gb|DV518213.1|DV518213
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCEST: gi|76911586|gb|DV164332.1|DV164332
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
EST: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCAT GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
genomic: GGCGTCTCGGTTGGCTGGCCTTCTGTGATCCCAACGGCGCGCTCAAGCATgtaagccacg ... tcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCC
ttcctctctgcatgcacattcagacgcgcgtctcatggtttcggatcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCATAGTCCAG
tcttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagccacgccacttcttgccatgtctccacattcctctctgcatgcacattcagacgcgcgtctcatggtttcggatcttcgaaagGTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCATAGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT