1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaggaattctgtgttgcagacagcatgcatgcatgtagctggatcaaaataagtgtgagttgttagtgttaatattacacttctttaaatcattatgcagGTACATCGGAAAAAAGGACAGCCACTGAAGAGCTGGTCCTGGACCTGAAAAC
species | Zea mays |
transcript | GRMZM2G006477_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCAGAAGTACCGCACAGCCCGCTATAAACCAGACCTGTCAGAAG GTACATCGGAAAAAAGGACAGCCACTGAAGAGCTGGTCCTGGACCTGAAAAEST: gi|89251548|gb|DY623334.1|DY623334
genomic: TGCAGAAGTACCGCACAGCCCGCTATAAACCAGACCTGTCAGAAGgtttatttgc ... cattatgcagGTACATCGGAAAAAAGGACAGCCACTGAAGAGCTGGTCCTGGACCTGAAAA
EST: CCGCTATAAACCAGACCTGTCAGAAG GTACATCGGAAAAAAGGACAGCCACTGAAGAGGTGGTCCTGGACCTGAAAA
genomic: CCGCTATAAACCAGACCTGTCAGAAGgtttatttgc ... cattatgcagGTACATCGGAAAAAAGGACAGCCACTGAAGAGCTGGTCCTGGACCTGAAAA
aaaataagtgtgagttgttagtgttaatattacacttctttaaatcattatgcagGTACATCGGAAAAAAGGACAGCCACTGAAGAGCTGGTCCTGGACCTGAAAAC
tgttaat putative branch site (score: 76)
ttaatattacacttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggaattctgtgttgcagacagcatgcatgcatgtagctggatcaaaataagtgtgagttgttagtgttaatattacacttctttaaatcattatgcagGTACATCGGAAAAAAGGACAGCCACTGAAGAGCTGGTCCTGGACCTGAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT