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gtaatatcttctattgtcattaatactactgtttggtactgtccattctgtttcatgtagtctatataacgcctttatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG
species | Zea mays |
transcript | GRMZM2G006468_T04 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|78113266|gb|DV531659.1|DV531659
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|5895762|gb|AW037008.1|AW037008
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|13178078|gb|BG349336.1|BG349336
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|60399773|gb|DN232583.1|DN232583
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|211436012|gb|FL361903.1|FL361903
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGAATGATAAATTGGGCEST: gi|60355084|gb|DN222057.1|DN222057
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|60358728|gb|DN225701.1|DN225701
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|14242681|gb|BG840373.2|BG840373
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGANTAAA-TGGGEST: gi|74242180|gb|DT650094.1|DT650094
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGA-TAAAATGGG
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|76010926|gb|DT938096.1|DT938096
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|211505179|gb|FL436188.1|FL436188
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|71774336|gb|DR972214.1|DR972214
genomic: TTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|211186705|gb|FL252850.1|FL252850
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|211186707|gb|FL252852.1|FL252852
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTTCACATT GCACGACCAACCATATATCEST: gi|76010925|gb|DT938095.1|DT938095
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|211186703|gb|FL252848.1|FL252848
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCEST: gi|32918930|gb|CF023742.1|CF023742
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGC
EST: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATT GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATG
genomic: TGGAGATGCCAAGTGTACTTCTGATGGCGGCTATTCGTAATGTCCACATTgtaatatctt ... tatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATG
gtttggtactgtccattctgtttcatgtagtctatataacgcctttatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG
atataac putative branch site (score: 3)
cgccttt CT-rich tract
tttatgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatatcttctattgtcattaatactactgtttggtactgtccattctgtttcatgtagtctatataacgcctttatgttatagGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA