1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgaaatcatgagttttggttaaaaggaaagaatttagctcttaacatatcctttgttaacatgtggttttcttttggtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACGCTCTGTCCTCAGAGAGTGCTGCTCAGGCGTGCCGGGGATTACGTGCAG
species | Zea mays |
transcript | GRMZM2G006429_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGATGTCGGCGAGTTCATTGTACCGATTCCACATGTCAAGCAAGTGAAG CTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACEST: gi|19822432|gb|BQ048456.1|BQ048456
genomic: CTGATGTCGGCGAGTTCATTGTACCGATTCCACATGTCAAGCAAGTGAAGgtgaaatcat ... gtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
EST: CTGATGTCGGCGAGTTCATCGTACCGATTCCACATGTCAAGCAAGTGAAG CTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACEST: gi|101394555|gb|EB819212.1|EB819212
genomic: CTGATGTCGGCGAGTTCATTGTACCGATTCCACATGTCAAGCAAGTGAAGgtgaaatcat ... gtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
EST: ATGTCAAGCAAGGGAAG CTCCCAAATACTGGTGGAAGGCTAATAATTGCATCAGATGGAATATGGGACEST: gi|211160527|gb|FL223273.1|FL223273
genomic: ATGTCAAGCAAGTGAAGgtgaaatcat ... gtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
EST: GTTCATCGTACCGATTCCACATGTCAAGCAAGTGAAG CTCCCAAMTACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACEST: gi|71762481|gb|DR960418.1|DR960418
genomic: GTTCATTGTACCGATTCCACATGTCAAGCAAGTGAAGgtgaaatcat ... gtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
EST: GTCAAGCAAGTGAAG CTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACEST: gi|26455794|gb|CA827377.1|CA827377
genomic: GTCAAGCAAGTGAAGgtgaaatcat ... gtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
EST: CTGATGTCGGCGAGTTCATCGTACCGATTCCACATGTCAAGCAAGTGAAG CTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
genomic: CTGATGTCGGCGAGTTCATTGTACCGATTCCACATGTCAAGCAAGTGAAGgtgaaatcat ... gtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGAC
atttagctcttaacatatcctttgttaacatgtggttttcttttggtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACGCTCTGTCCTCAGAGAGTGCTGCTCAGGCGTGCCGGGGATTACGTGCAG
tgttaac putative branch site (score: 76)
ttaacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaatcatgagttttggttaaaaggaaagaatttagctcttaacatatcctttgttaacatgtggttttcttttggtaattgtagCTCCCAAATACTGGTGGAAGACTAATAATTGCATCAGATGGAATATGGGACGCTCTGTCCTCAGAGAGTGCTGCTCAGGCGTGCCGGGGATTACGTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT