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...aaggttgtatgcagtattgtctaagtttgatattctaataatgagtagcaaacttgtttgttttcttagtcataactgctgagcttgctttgtttttcagGGAGGTGACATTGCAAAAGAAAATG
species | Zea mays |
transcript | GRMZM2G006107_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTTACAAGGGAACATTGTTCCACCGCGTGATCAAGGGGTTTATGGCACAA GGAGGTGACATTGCAAAAGAAAATGEST: gi|94479119|gb|EB708077.1|EB708077
genomic: GTTACAAGGGAACATTGTTCCACCGCGTGATCAAGGGGTTTATGGCACAAgttagttttt ... tgtttttcagGGAGGTGACATTGCAAAAGAAAATG
EST: GTTACAAGGGAACATTGTTCCACCGCGTGATCAAGGGGTTTATGGCACAA GGAGGTGACATTGCAAAAGAAAATGEST: gi|33467794|gb|CF244843.1|CF244843
genomic: GTTACAAGGGAACATTGTTCCACCGCGTGATCAAGGGGTTTATGGCACAAgttagttttt ... tgtttttcagGGAGGTGACATTGCAAAAGAAAATG
EST: GTTACAAGGGAACATTGTTCCACCGCGTGATCAAGGGGTTTATGGCACAA GGAGGTGACATTGCAAAAGAAAATG
genomic: GTTACAAGGGAACATTGTTCCACCGCGTGATCAAGGGGTTTATGGCACAAgttagttttt ... tgtttttcagGGAGGTGACATTGCAAAAGAAAATG
tagcaaacttgtttgttttcttagtcataactgctgagcttgctttgtttttcagGGAGGTGACATTGCAAAAGAAAATG
tcataac putative branch site (score: 2)
cttgctttgtttttc putative PPT
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggttgtatgcagtattgtctaagtttgatattctaataatgagtagcaaacttgtttgttttcttagtcataactgctgagcttgctttgtttttcagGGAGGTGACATTGCAAAAGAAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA