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...ttgtttctcctcccactattttttttattgttctgaatcagtacataattgcatcttggtgtcagttgtaatatgtttcacatgtggctttctattttagGTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAGCTTTGTGATAGGAGAAATG
species | Zea mays |
transcript | GRMZM2G006069_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GTGTGGATATTTCATCCTTTGAGAAACTGCTGGAGAACCTTGTGATCAAA GTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAGEST: gi|18178045|gb|BM379255.1|BM379255
genomic: GTGTGGATATTTCATCCTTTGAGAAACTGCTGGAGAACCTTGTGATCAAAgtaagtcctt ... tctattttagGTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAG
EST: GTGTGGATATTTCATCCTTTGAGAAACTGCTGGAGAACCTTGTGATCAAA GTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAGEST: gi|76283051|gb|DV022619.1|DV022619
genomic: GTGTGGATATTTCATCCTTTGAGAAACTGCTGGAGAACCTTGTGATCAAAgtaagtcctt ... tctattttagGTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAG
EST: GTGTGGATATTTCATCCTTTGAGAAACTGCTGGAGAACCTTGTGATCAAA GTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAG
genomic: GTGTGGATATTTCATCCTTTGAGAAACTGCTGGAGAACCTTGTGATCAAAgtaagtcctt ... tctattttagGTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAG
taattgcatcttggtgtcagttgtaatatgtttcacatgtggctttctattttagGTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAGCTTTGTGATAGGAGAAATG
ctttctatttt CT-rich tract
tttctatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtttctcctcccactattttttttattgttctgaatcagtacataattgcatcttggtgtcagttgtaatatgtttcacatgtggctttctattttagGTTGTGCCGATGGAAAATATGAATGGTCGCAAACGTGTCGAAGAAGGGGAGCTTTGTGATAGGAGAAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
-tgtttct
- - - - - -cccacta
- - - - - - - - - - - - - - - - ctgaatc
- - - - - - - - - - - - - - - - - - - - - - - - ttgcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgg