1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgtgctgcctgtctccattgtcgttatgtaagtttactcatgtaattagcatagatatgttttcacttcatttgatctgctcatatcgttgatgatggtaaaaaaaacattgaaataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG
species | Zea mays |
transcript | GRMZM2G005859_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTEST: gi|211010141|gb|FL113888.1|FL113888
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCT
EST: GGCTGCTAGCTCAATTGGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCACTGGCCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCEST: gi|71445181|gb|DR826231.1|DR826231
genomic: GGCTGCTAGCTCAATTGG-CGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCC-GATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGC
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTEST: gi|9953868|gb|BE640451.1|BE640451
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCT
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTEST: gi|5525259|gb|AI861098.1|AI861098
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCT
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCEST: gi|78022617|gb|DV491004.1|DV491004
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTC
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTEST: gi|9028504|gb|BE238499.1|BE238499
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCT
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTEST: gi|76290855|gb|DV030423.1|DV030423
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCT
EST: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTEST: gi|78091085|gb|DV519459.1|DV519459
genomic: TGGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCT
EST: GGCTGCTAGCTNCA-TTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAG GGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTEST: gi|13149629|gb|BG319951.1|BG319951
genomic: GGCTGCTAGCT-CAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCT
EST: GGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCATTTCAG GGAGCACTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGC
genomic: GGCTGCTAGCTCAATTGGCGAGGAGCTGTTCTACCGCGCCGCCA-TTCAGgtatgtgctg ... ataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGC
atttgatctgctcatatcgttgatgatggtaaaaaaaacattgaaataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG
cgttgat putative branch site (score: 5)
taaaaaaaacattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtgctgcctgtctccattgtcgttatgtaagtttactcatgtaattagcatagatatgttttcacttcatttgatctgctcatatcgttgatgatggtaaaaaaaacattgaaataattgtagGGAGCATTGGCCGATATTTTCCTGAGAAGCACGGAGCTAATGAAGGATGCTCGAGGGATTGCATCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG