1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttttgtttattatgctctataaatcttataatcctcttttttgaatctgaaccccttcctatagaaatgaaaatcatgaccgttgtctcttgtgtttcagGAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTGACAACAAATGGAAAGCCCAAAGAATTATTCTTCTCCAGTGATCTATGTG
species | Zea mays |
transcript | GRMZM2G005849_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAATTGATTGCATGCAAACGAGGCAGCCAACTGATACTTGGTGTCAAC GAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTGEST: gi|149081060|gb|EE170160.2|EE170160
genomic: ATGAATTGATTGCATGCAAACGAGGCAGCCAACTGATACTTGGTGTCAACgtgagtgaaa ... tgtgtttcagGAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTG
EST: ATGAATTGATTGCATGCAAACGAGGCAGCCAACTGATACTTGGTGTCAAC GAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTG
genomic: ATGAATTGATTGCATGCAAACGAGGCAGCCAACTGATACTTGGTGTCAACgtgagtgaaa ... tgtgtttcagGAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTG
tctgaaccccttcctatagaaatgaaaatcatgaccgttgtctcttgtgtttcagGAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTGACAACAAATGGAAAGCCCAAAGAATTATTCTTCTCCAGTGATCTATGTG
ttgtctctt CT-rich tract
tatagaaatgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgtttattatgctctataaatcttataatcctcttttttgaatctgaaccccttcctatagaaatgaaaatcatgaccgttgtctcttgtgtttcagGAATTGAGTGGTCAACAGAATGGGAAATCATTTCATGATGTCAAAACCTTGACAACAAATGGAAAGCCCAAAGAATTATTCTTCTCCAGTGATCTATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA