1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gttggtcccacactagacggactcatttctgttggagcatgcacatatgctagtttctcaatggttctcctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATGCGTACTAAAATAGAGCAAATGGAGAAAGCTAATCTTGAACCCAGCACGT
species | Zea mays |
transcript | GRMZM2G005308_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAAT GATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATGEST: gi|9255313|gb|BE345781.1|BE345781
genomic: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAATgttggtccca ... ctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATG
EST: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAAT GATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATGEST: gi|31363813|gb|CD448168.1|CD448168
genomic: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAATgttggtccca ... ctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATG
EST: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAAT GATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATGEST: gi|31351205|gb|CD435562.1|CD435562
genomic: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAATgttggtccca ... ctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATG
EST: CTCAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAAT GATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATG
genomic: ATGAAGCACATGAAGTTGAACTCCATGACAGTGAGAATGATGATGGAAATgttggtccca ... ctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATG
atttctgttggagcatgcacatatgctagtttctcaatggttctcctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATGCGTACTAAAATAGAGCAAATGGAGAAAGCTAATCTTGAACCCAGCACGT
ttctcctttgt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttggtcccacactagacggactcatttctgttggagcatgcacatatgctagtttctcaatggttctcctttgtgcagGATGAACAAGAACATGGTCTCTCAACTCACGAAAAGGAGCGTCTGAAGATGCGTACTAAAATAGAGCAAATGGAGAAAGCTAATCTTGAACCCAGCACGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA