1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaaagaagacccccaacgatgttctcttcatctttggttggttgtgttctcccgtcgctgatacctgggtatggttttggttttgttgtggtgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCGGAAGCTGGAGGAGCAGCAGCAGGCTGCCGAACTGCAGCACGCCATTGA
species | Zea mays |
transcript | GRMZM2G003424_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCTCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|211500619|gb|FL214005.1|FL214005
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|211500615|gb|FL214001.1|FL214001
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|211500618|gb|FL214004.1|FL214004
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|28930856|gb|CB334217.1|CB334217
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|149015221|gb|EE045006.2|EE045006
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|9254329|gb|BE344797.1|BE344797
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCTCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|71757084|gb|DR955021.1|DR955021
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|87156061|gb|DY400850.1|DY400850
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCTCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|211500616|gb|FL214002.1|FL214002
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|29945367|gb|CB815603.1|CB815603
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|211500621|gb|FL214007.1|FL214007
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|148951391|gb|EC897107.2|EC897107
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCEST: gi|211500620|gb|FL214006.1|FL214006
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
EST: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCG GCGCGAGGATGCTGCAGCATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
genomic: GCCCACTGGCGGGCTGGACGCCCGAGATCCCTTTGATCTGCACCAACTCGgtaaaagaag ... tgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCC
ttctcccgtcgctgatacctgggtatggttttggttttgttgtggtgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCGGAAGCTGGAGGAGCAGCAGCAGGCTGCCGAACTGCAGCACGCCATTGA
cgctgat putative branch site (score: 4)
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaagaagacccccaacgatgttctcttcatctttggttggttgtgttctcccgtcgctgatacctgggtatggttttggttttgttgtggtgattgtcagGCGCGAGGATGCTGCAACATTCGAACAGCGCCAACGAGCTGCTGTTGCGCCGGAAGCTGGAGGAGCAGCAGCAGGCTGCCGAACTGCAGCACGCCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG