1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaattaaaatattaaatatttatctggttgatggtgaatggcttccacaaaaacaatatgccgcatgaataatataatgcatacttctgtagGTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAATATGTGGATTGGACAGACAGAGGTACATGCATCCTTTTTGGTGATGCTGC
species | Zea mays |
transcript | GRMZM2G003190_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTGCAGTGNGTTTATAGTTGGCTTAATCACAGCTACTCGTTTTATCAAAG GTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAA-TEST: gi|71429556|gb|DR810606.1|DR810606
genomic: TTGCAGTGGGTTTATAGTTGGCTTAATCACAGCTACTCGTTTTATCAAAGgtaattaaaa ... acttctgtagGTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAAT
EST: TTGCAGTGGGTTTATAGTGGGCTTAATCACAGCTACTCGTTTTATCAAAG GTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAATEST: gi|67024943|gb|CO453692.1|CO453692
genomic: TTGCAGTGGGTTTATAGTTGGCTTAATCACAGCTACTCGTTTTATCAAAGgtaattaaaa ... acttctgtagGTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAAT
EST: TTGCAGTGGGTTTATAGTTGGCTTAATCACAGCTACTCGTTTTATCAAAG GTGGAGGTTTTCAGAATATCTTAGTAGTTGGTGCTGATGCTCTTTCAAAAT
genomic: TTGCAGTGGGTTTATAGTTGGCTTAATCACAGCTACTCGTTTTATCAAAGgtaattaaaa ... acttctgtagGTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAAT
atggcttccacaaaaacaatatgccgcatgaataatataatgcatacttctgtagGTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAATATGTGGATTGGACAGACAGAGGTACATGCATCCTTTTTGGTGATGCTGC
tacttct CT-rich tract
aataatataatgcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaaaatattaaatatttatctggttgatggtgaatggcttccacaaaaacaatatgccgcatgaataatataatgcatacttctgtagGTGGAGGTTTTCAGAATATCCTAGTAGTTGGTGCTGATGCTCTTTCAAAATATGTGGATTGGACAGACAGAGGTACATGCATCCTTTTTGGTGATGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC