1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaagcattgtttctaaagtgctatgttttatatggccttacaagtaactctttgtttttaatgatacttaaaaagatgtacaattcatttcatggtaatatagAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG
species | Zea mays |
transcript | GRMZM2G003096_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGT AATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGEST: gi|13178188|gb|BG349446.1|BG349446
genomic: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGTgtaagcattg ... ggtaatatagAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGG
EST: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGT AATCATCGCCATGCTTGAGAAGACEST: gi|13178513|gb|BG349771.1|BG349771
genomic: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGTgtaagcattg ... ggtaatatagAATCATCGCCATGCTTGAGAAGAC
EST: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGT AATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGEST: gi|89249664|gb|DY621450.1|DY621450
genomic: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGTgtaagcattg ... ggtaatatagAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGG
EST: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGT AATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGG
genomic: CTTCTCATGAAAGCTCATGCTGCAACTTCTTCTATTGGATCTGCAACAGTgtaagcattg ... ggtaatatagAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGG
tctttgtttttaatgatacttaaaaagatgtacaattcatttcatggtaatatagAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG
ttttaat putative branch site (score: 3)
tttttaatgatactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcattgtttctaaagtgctatgttttatatggccttacaagtaactctttgtttttaatgatacttaaaaagatgtacaattcatttcatggtaatatagAATCATCGCCATGCTTGAGAAGACCGGGACTCTAAAAATTGCAAGTGTGGGAGATTGTGGGTTGAAAGTTATTCGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT