Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagcagggcttaagcctccctttgttaatgtcttgtttagtaagctgcaccatttctgactttgcccttttgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC

Basic information

species Zea mays
transcript GRMZM2G002616_T01
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G002616_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g73880.1 (Oryza sativa), 3'ss of exon 4
gtgagcagggcttaagcctccctttgtta-atgtcttgtttagtaagctgcaccatttctgactt-tgcccttttgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC-
||||| ||  |||| || |   |   ||| ||| || | | | |||      |  ||||| | |  |||||||||  | || ||||||||||||| |||||||||||||| || |||||||| ||||| ||||||||      ||    ||| ||| |        |||||     ||| |||  
gtgagtagtcctta-gctttgttacattatatgcctggatgaataa------ctgtttcttattcgtgccctttttggttgtagGACGATGCAAAAAAGATGGACAAAGGTCTCAAGAACCGCTACACAGTTTGATCTGAGCACTCCTGTCC-AGATATCCAAGAGAGTAGTATATCCACATGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60356415|gb|DN223388.1|DN223388
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60349185|gb|DN216158.1|DN216158
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60400734|gb|DN233541.1|DN233541
EST:     CCATTGGATTCATTGTTCAC                         GACGATGCAAAGTAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: CCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60339268|gb|DN206241.1|DN206241
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|148968176|gb|EE019466.2|EE019466
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|110195701|gb|EC877598.1|EC877598
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|42492011|gb|CK701057.1|CK701057
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60359494|gb|DN226467.1|DN226467
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|4647639|gb|AI622714.1|AI622714
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|16377497|gb|BI991969.1|BI991969
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|88852805|gb|DY543029.1|DY543029
EST:     AGTGGAAGGAACTTCTGGACTACATG-ACTCCATTGGATTCATTGTTCAT                         GGCGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|78544202|gb|DV621700.1|DV621700
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|116818839|gb|EC861887.1|EC861887
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|32828562|gb|CD968240.1|CD968240
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|88852761|gb|DY542985.1|DY542985
EST:     AGTGGAAGGAACTTCTGGACTACATG-ACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|88852720|gb|DY542944.1|DY542944
EST:     AGTGGAAGGAACTTCTGGACTACATG-ACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGGCAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60356256|gb|DN223229.1|DN223229
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|211221053|gb|FL468691.1|FL468691
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAAC-GTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|20336959|gb|BQ172589.1|BQ172589
EST:     AGCGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|32829653|gb|CD969331.1|CD969331
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAAC-GTTACACGGTT-GA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|88852748|gb|DY542972.1|DY542972
EST:     AGTGGAAGGAACTTCTGGACTACATG-ACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|91053164|gb|EB163582.1|EB163582
EST:     AGTGGAAGGAACTTTTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60346333|gb|DN213306.1|DN213306
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|32860049|gb|CD999730.1|CD999730
EST:     AGTGGAAGGAACTTTTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60347390|gb|DN214363.1|DN214363
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|88852738|gb|DY542962.1|DY542962
EST:     AGTGGAAGGAACTTCTGGACTATATG-ACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|44900742|gb|CK827287.1|CK827287
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|29577092|gb|CB617204.1|CB617204
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60357390|gb|DN224363.1|DN224363
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|71447985|gb|DR829035.1|DR829035
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60398596|gb|DN231412.1|DN231412
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|211235178|gb|FL451436.1|FL451436
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|37379766|gb|CF626640.1|CF626640
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|12968083|gb|BG265030.1|BG265030
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACAAGATTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|148968177|gb|EE019467.2|EE019467
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60353078|gb|DN220051.1|DN220051
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|30088194|gb|CB886399.1|CB886399
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAA-GGCCTGAGGA-CCGTTAC-CGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|60355408|gb|DN222381.1|DN222381
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|213175369|gb|FM190157.1|FM190157
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|6469002|gb|AW191778.1|AW191778
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAAATAAACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|211235179|gb|FL451437.1|FL451437
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|213178516|gb|FM182938.1|FM182938
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGA
EST: gi|32858290|gb|CD997971.1|CD997971
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGNTTTG
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGG-TTTG
EST: gi|85152888|gb|DW587890.1|DW587890
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTTG
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTT-G
EST: gi|32860050|gb|CD999731.1|CD999731
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|88852740|gb|DY542964.1|DY542964
EST:     AGTGGAAGGAACTTCTGGACTACATG-ACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|50334082|gb|CO529208.1|CO529208
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|37394065|gb|CF634302.1|CF634302
EST:     AGTGGATGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|149089128|gb|EE178311.2|EE178311
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|211425446|gb|FL011471.1|FL011471
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|148928878|gb|EC873836.2|EC873836
EST:     AGTGGAAGGAACTTTTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|12968082|gb|BG265029.1|BG265029
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|6601755|gb|AW256196.1|AW256196
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|91053165|gb|EB163583.1|EB163583
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
EST: gi|213171363|gb|FM192078.1|FM192078
EST:     AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCAT                         GACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA
genomic: AGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 388

GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 241

GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 260

GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 242

GTAAGCATCGGGAAGCAGTGGAAGGAACTTCTGGACTACAAGGACTCCATTGGATTCATTGTTCATgtgagcaggg ... tgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgtcttgtttagtaagctgcaccatttctgactttgcccttttgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC
                            ttctgac  putative branch site (score: 242)
                                  ctttgcccttttgt  CT-rich tract
          tttagtaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagcagggcttaagcctccctttgttaatgtcttgtttagtaagctgcaccatttctgactttgcccttttgtgctgcagGACGATGCAAAGAAGATGGACAAAGGCCTGAAGAACCGTTACACGGTTTGATCCTGATGCTGGAATCCCAGAGAGTTGTAGCAGTAGCTGGCCCAAATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA