1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaactttttggaagtaaattttcagatctactagacaaagaagcaatactttgtcccgcagtctttttaaagattacaattatgattttatttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCACTGAAGGTGGTCCAACTGAAGAAGAGCCAGAGGAGTAATCTAGATCAA
species | Zea mays |
transcript | GRMZM2G002440_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|5739690|gb|AI947266.1|AI947266
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: ATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|50332490|gb|CO527616.1|CO527616
genomic: ATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|37394200|gb|CF634371.1|CF634371
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|5819185|gb|AI987391.1|AI987391
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|13237180|gb|BG355194.1|BG355194
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|67042408|gb|CO468663.1|CO468663
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|18659614|gb|BM500430.1|BM500430
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|32934212|gb|CF039024.1|CF039024
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|5607682|gb|AI901349.1|AI901349
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|88754856|gb|DY538997.1|DY538997
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGGTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|21828625|gb|BQ703309.1|BQ703309
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|74234069|gb|DT641983.1|DT641983
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCEST: gi|5343189|gb|AI795374.1|AI795374
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCEST: gi|16378404|gb|BI992428.1|BI992428
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTC
EST: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAG GTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
genomic: AAATTCCTGATCCTTCAAAACCATCAGGAACTGTTGCTGCTGTTGTGAAGgtatgcattt ... tttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTC
atactttgtcccgcagtctttttaaagattacaattatgattttatttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCACTGAAGGTGGTCCAACTGAAGAAGAGCCAGAGGAGTAATCTAGATCAA
ttttatttttttc CT-rich tract
agtctttttaaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaactttttggaagtaaattttcagatctactagacaaagaagcaatactttgtcccgcagtctttttaaagattacaattatgattttatttttttcagGTTGGCTACATGTTACATGATCGTGTTCTTCGCCCCGCTGAAGTTGGTGTCACTGAAGGTGGTCCAACTGAAGAAGAGCCAGAGGAGTAATCTAGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA