1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatgttgttgctttgctgtttgtttagagagtataatttcctatcaaatttagaattttagcatcttcctcttctaagtttgaaatatgttatctgtggagatatcttgtgattcatctgacacgggtttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTCGAAGCCAAGGATGTGTTGCTGCACTTAG
species | Zea mays |
transcript | GRMZM2G002276_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTCEST: gi|71426365|gb|DR807415.1|DR807415
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTC
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTCEST: gi|32833784|gb|CD973462.1|CD973462
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTC
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGTEST: gi|409610|gb|T12672.1|T12672
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGT
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTCEST: gi|71328191|gb|DR800734.1|DR800734
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTC
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGTACCTGGGCAAAGCACAGGAAATCATCAGTTGTCEST: gi|86473700|gb|DY240070.1|DY240070
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTC
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGTCCCTTGGCAAAGCACAGGAAATCATCAGTTGTCEST: gi|32834929|gb|CD974607.1|CD974607
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTC
EST: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCG GTGACTGCATTTGCGTGT
genomic: CTGAAGTGGAGGATTTACTTCTAGAAATCGCCGATGACTTCATTGACTCGgtaatgttgt ... ttgcgattagGTGACTGCATTTGCGTGT
aatatgttatctgtggagatatcttgtgattcatctgacacgggtttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTCGAAGCCAAGGATGTGTTGCTGCACTTAG
atctgac putative branch site (score: 3)
atatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttgttgctttgctgtttgtttagagagtataatttcctatcaaatttagaattttagcatcttcctcttctaagtttgaaatatgttatctgtggagatatcttgtgattcatctgacacgggtttgcgattagGTGACTGCATTTGCGTGTACCTTGGCAAAGCACAGGAAATCATCAGTTGTCGAAGCCAAGGATGTGTTGCTGCACTTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC