1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tggaaagtggtacttaaaatttgtatcttggatgtagccgttagttgaaatttgaaacatattttacagatttataacagtaaaatactgcttttttcagAAATGACTGCCCCGTGCGTTGCGACGGCTTACAACAATACCCATGTAAACTATCCACCAAAAAAATTTCAATATTTTTTGTTTATTGTCTCCGCTCTCCG
species | Zea mays |
transcript | GRMZM2G001904_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GCCAACAGCTCAGAGAAAGCAGAGGTGGCAGCGGCGACGATGAGACTTTT AAATGACTGCCC-GTGCGTTGCGACEST: gi|30031804|gb|CB833655.1|CB833655
genomic: GCCAACAGCTCAGAGAAAGCAGAGGTGGCAGCGGCGACGATGAGACTTTTgtatgcttct ... cttttttcagAAATGACTGCCCCGTGCGTTGCGAC
EST: GCCAACAGCTCAGAGAAAGCAGAGGGGGCAGCGGCGACGATGAGACTTTT AAATGACTGCCCCEST: gi|31558707|gb|CD527919.1|CD527919
genomic: GCCAACAGCTCAGAGAAAGCAGAGGTGGCAGCGGCGACGATGAGACTTTTgtatgcttct ... cttttttcagAAATGACTGCCCC
EST: GCCAACAGCTCAGAGAAAGCAGAGGTGGCAGCGGCGACGATGAGACTTTT AAATGACTGCCCCGTGCGTTGCGACGGCTTACAACAATACCCATGTAAACT
genomic: GCCAACAGCTCAGAGAAAGCAGAGGTGGCAGCGGCGACGATGAGACTTTTgtatgcttct ... cttttttcagAAATGACTGCCCCGTGCGTTGCGACGGCTTACAACAATACCCATGTAAACT
tgaaatttgaaacatattttacagatttataacagtaaaatactgcttttttcagAAATGACTGCCCCGTGCGTTGCGACGGCTTACAACAATACCCATGTAAACTATCCACCAAAAAAATTTCAATATTTTTTGTTTATTGTCTCCGCTCTCCG
ttataac putative branch site (score: 14)
ctgcttttttc putative PPT
atattttacagattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaaagtggtacttaaaatttgtatcttggatgtagccgttagttgaaatttgaaacatattttacagatttataacagtaaaatactgcttttttcagAAATGACTGCCCCGTGCGTTGCGACGGCTTACAACAATACCCATGTAAACTATCCACCAAAAAAATTTCAATATTTTTTGTTTATTGTCTCCGCTCTCCG
- - - -tggtact
- - - - - - - - - - - - - -ttggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagtaaaa