1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctggataaatatggagtagctaaaattgttttgtgtaaacaaggatttttttccaacccatgagtataacacttttcttctatttcactgtaaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGGTTTTGTTCTGGATCTATACCTTTGAGTTACTGCATCAT
species | Zea mays |
transcript | GRMZM2G000393_T02 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GNGATGCTCTGAAGAAGCTTGAGGAAAAGEST: gi|211507519|gb|FL321825.1|FL321825
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAG
EST: GGCTCCCGTCTCAAGAG-AACGTCTTCCCGTG-CTC-TGNATGCAAAGAG -TGATGCTCTGAAEST: gi|21843330|gb|BQ703911.1|BQ703911
genomic: GGCTCCCGTCTCAAGAGGAACGTCTTCC-GTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAA
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTAEST: gi|78090931|gb|DV519305.1|DV519305
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTA
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAAGAAGCTTGAGGAAA-GGGTGTAGCTATTCGTTTTGTTAEST: gi|211340421|gb|FL351902.1|FL351902
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTA
EST: GGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCCTGGATGC-AAGAG GTGATGCTCTGAAGAAGCEST: gi|76015038|gb|DT942208.1|DT942208
genomic: GGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCC-TGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGC
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTAEST: gi|22819731|gb|BU499821.1|BU499821
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTA
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTAEST: gi|4621544|gb|AI612377.1|AI612377
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTA
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTAEST: gi|149084753|gb|EE174248.2|EE174248
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTA
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAEST: gi|71448461|gb|DR829511.1|DR829511
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGA
EST: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAG GTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCCTTTTGTTA
genomic: TGGCTCCCGTCTCAAGAGGAACGTCTTCCGTGGCTCCTGGATGCCAAGAGgtttgctgct ... taaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTA
tttttttccaacccatgagtataacacttttcttctatttcactgtaaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGGTTTTGTTCTGGATCTATACCTTTGAGTTACTGCATCAT
gtataac putative branch site (score: 176)
ttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctggataaatatggagtagctaaaattgttttgtgtaaacaaggatttttttccaacccatgagtataacacttttcttctatttcactgtaaattgcagGTGATGCTCTGAAGAAGCTTGAGGAAAAGGGTGTAGCTATTCGTTTTGTTATTGGTCGGAGGTTTTGTTCTGGATCTATACCTTTGAGTTACTGCATCAT
- - - - - - - - - - - - - tgttttg
- - - - - - - - - - - - - - - - - - aaacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - ccaaccc