1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtactgagttaggactcaggagtacttatcagatcaatttattatttatgttgcccatttgtaaaatcttattacattgccattcattgtcttctgaatgttttgcttctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
species | Zea mays |
transcript | AC217947.4_FGT002 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|148961292|gb|EE012017.2|EE012017
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|31441089|gb|CD510520.1|CD510520
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|38502682|gb|CF972542.1|CF972542
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|28910222|gb|CB331332.1|CB331332
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|74235808|gb|DT643722.1|DT643722
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|13149591|gb|BG319913.1|BG319913
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAGEST: gi|74235807|gb|DT643721.1|DT643721
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
EST: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAG GTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
genomic: AGTATGCTGTGTTTGGTCTGGGCAACCGACAGTATGAGCATTTCAACAAGgtactgagtt ... ctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
aaatcttattacattgccattcattgtcttctgaatgttttgcttctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
ttttgcttct CT-rich tract
ttattacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgagttaggactcaggagtacttatcagatcaatttattatttatgttgcccatttgtaaaatcttattacattgccattcattgtcttctgaatgttttgcttctggctacagGTTGCCAAGGTAGTCGATGAGATCCTGACAGAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC