1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cggccgtggaacaggaaagtgtccctgcagaacaggaactgttgaaaataacgcaatacctgtgatttcttacactactgtttcatgactcttttgacagATTACTGCATGCAATCTATCTAGATTTGTGGAGCCAACACCTATTCAATCTCAAGGTTGGCCTATGACTTTGAAGGGTAGGGACCTGATTGATATCGCTC
species | Zea mays |
transcript | AC217043.3_FGT002 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
aaataacgcaatacctgtgatttcttacactactgtttcatgactcttttgacagATTACTGCATGCAATCTATCTAGATTTGTGGAGCCAACACCTATTCAATCTCAAGGTTGGCCTATGACTTTGAAGGGTAGGGACCTGATTGATATCGCTC
ttcttac putative branch site (score: 2)
ctctttt putative PPT
atttctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cggccgtggaacaggaaagtgtccctgcagaacaggaactgttgaaaataacgcaatacctgtgatttcttacactactgtttcatgactcttttgacagATTACTGCATGCAATCTATCTAGATTTGTGGAGCCAACACCTATTCAATCTCAAGGTTGGCCTATGACTTTGAAGGGTAGGGACCTGATTGATATCGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - -cctgcag
- - - - - - - - - - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - - - - - - - - -aaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttca