1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gaaagtggaaacaattaggaataaaaagttgcttcaatctatagttagttagttaccttttgttactttccttccctcaaatattcatatgtttatacagGTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAACTTCCAGTTCTCTGTATGGACATATCATCAGATGGAGCTTTGCTAGTTA
species | Zea mays |
transcript | AC209858.4_FGT002 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCCCGANAG-AAAGCACATTGCTGTTGCTCTCTTGGATTGCCATGTCAAG GTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAAEST: gi|67013994|gb|CO442743.1|CO442743
genomic: TCCCGA-AGGAAAGCACATTGCTGTTGCTCTCTTGGATTGCCATGTCAAGgttgctctct ... gtttatacagGTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAA
EST: TCCCGAAAGGAA-GCACATTGCTGTTGCTCTCTTGGATTGCCATGTCAAG GTCTTC-ACATGGACACACTGAAAACATCTTTTAAACCTTTATGGGCACCAEST: gi|148933242|gb|EC876892.2|EC876892
genomic: TCCCGAA-GGAAAGCACATTGCTGTTGCTCTCTTGGATTGCCATGTCAAGgttgctctct ... gtttatacagGTCTTCCACATGGACACACTGAAACCATCTTT-AAACCTTTATGGGCACAA
EST: GTCCCGAAGGAAAGCACATTGCTGTTGCTCTCTTGGATTGCCATGTCAAG GTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAA
genomic: GTCCCGAAGGAAAGCACATTGCTGTTGCTCTCTTGGATTGCCATGTCAAGgttgctctct ... gtttatacagGTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAA
tagttagttaccttttgttactttccttccctcaaatattcatatgtttatacagGTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAACTTCCAGTTCTCTGTATGGACATATCATCAGATGGAGCTTTGCTAGTTA
tcaaatattcatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagtggaaacaattaggaataaaaagttgcttcaatctatagttagttagttaccttttgttactttccttccctcaaatattcatatgtttatacagGTCTTCCACATGGACACACTGAAACCATCTTTAAACCTTTATGGGCACAAACTTCCAGTTCTCTGTATGGACATATCATCAGATGGAGCTTTGCTAGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - aaacaat
- - - - - - - - - - ataaaaa
- - - - - - - - - - - - - - -tgcttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcatat