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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG

Basic information

species Zea mays
transcript AC205703.4_FGT004
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os10g32880.1 (Oryza sativa), 3'ss of exon 12
gtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagt-ttctaatat---ttccatcactttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG
||| | |  |      |  || |  |||| ||||   ||||| |||  | |||| ||||   |  ||||||| |||||||| ||||||  ||||| || ||||||||||||||||| ||||||||||| ||||||||  | || || ||||| |  ||||||||||| ||| |||
gtatgaatctctccatagtgcaatctgcaaaatgttgaatttcttttttattctgatatatgtatcatcactgtacagACTGCTGCTCTCGATGGAGTCAAGCTTTGGGATCTTCGAAAATTAAGAAACTTTAGGACGATATCACCTTATGACTCAGACACGCCAACAAATTCTG

upper sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA20G21330.1 (Glycine max), 3'ss of exon 14
gtacgtaatttagataaaagctacgtgcacaatgacaa--atttatttagt-ttctaatatttccatca--ctttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG
||| || |   | |    | ||| ||  |  ||||  |   |||||  ||| |||| ||  | |  | |   || ||||||| ||||||||||||||||||||||||||||||| |||||| | |  || || |||| |||  |||| ||||||| ||| || ||||| |   | |
gtatgtga--gaaaatgtaacta-gtaaagtatgatgattgtttatacagtattcttattgtactcttaaatttgacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAACTGAAGAACTTCAGGAATTTTGCTCCATATGATTCGGAAACACCAACGAGCTCCG

upper sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA10G26870.1 (Glycine max), 3'ss of exon 14
gtacgtaatttagataaaagctacgtgcacaatgacaaatttatttagt--ttctaatatttccatca--ctttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG
||| | ||   | ||  ||       | |  ||||    |||||  |||  || ||||  |    | |   | |||||||| ||||||||||||||||||||||||||||||| |||||||| |  || || |||| |||  |||| |||||||  || || || || |   | |
gtatgcaaga-aaatgtaacgagtaagtatgatgattgttttatacagtatttttaattgtattcttaaattctacagACTGCTGCTCATGATGGTGTTAAGCTTTGGGATCTACGTAAATTGAAGAACTTCAGGAATTTTGCTCCATATGATTCAGAAACACCGACGAGCTCCG

upper sequence: AC205703.4_FGT004 (Zea mays), 3'ss of exon 4
lower sequence: Vv05s0049g01840.t01 (Vitis vinifera), 3'ss of exon 14
gtacgtaattt---agataaaagc---tacgtgcacaa-tgacaaatttatttagtttctaatatttccatcactttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG
||| ||  |||   |  || |||    || |||   || ||||| |  | | |  ||| | ||  ||       |||  ||||| | |||||||||||||||||||| |||||||| || ||||| || |||||  |||| ||  | || |||||||   | ||  |||| ||  |||
gtatgtgttttcctaattagaagtgtatatgtgaggaagtgacatacatttctgattttttatgctt--gatgtttt-tagACTGCAGCTCATGATGGTGTTAAGCTGTGGGATCTACGAAAATTGAGGAATTTCCGGACCTTTACACCATATGATTCAAATACAGCAACAAACTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctacgtgcacaatgacaaatttatttagtttctaatatttccatcactttacagACTACTGCTCATGATGGTGTTAAGCTTTGGGATCTTCGTAAATTAAGAAATTTTAGGACTTTCTCTCCCTATGATTTGGACACGCCAACCAATACTG
                              ttctaat  putative branch site (score: 2)
                                      tttccatc  CT-rich tract
           aatgacaaatttattt  TA-rich tract