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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattaaaccagatagagcagcattccgacggtgccgcgcgcatctgccatgtccaataatgcgtcgccggcgtgaaaccttagctgctctggccgtctcgtggcttactggctgcagGTGCATCTCCAAGGAGGAGCTGGAGCAGGCGCTCAAGGAGAAGGGGCTCCTGGACGGCAGGGACATCAAGGACATCATCTCGGAGGTCGACGCCGACAAC

Basic information

species Zea mays
transcript AC203294.3_FGT001
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC203294.3_FGT001 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os01g59360.1 (Oryza sativa), 3'ss of exon 6
gtaaattaaaccagatagagcagcattccgacggtgccgcgcgcatctgccatgtccaataatgcgtcgccggcgtgaaaccttagctgctctggccgtctcgtggcttactggctgcagGTGCATCTCCAAGGAGGAGCTGGAGCAGGCGCTCAAGGAGAAGGGGCTCCTGGACGGCAGGGACATCAAGGACATCATCTCGGAGGTCGACGCCGACAAC
                        | | |  | |   | |    || ||        ||| |  |      |  || |||   |   |  |   |   |||    |  |||   |||||| ||||| || ||||||||||| ||||| ||||| | |||||| || || || || ||||| |||||||| |||||||| || || ||||||||||| |||
---------------------gtaactactgcagattctccaaaatttgatgcaaa-aattacacaagagagcagtcaaattct--ttatttaag--atctgtgcgtgtacct-ctgcagCTGCATTTCGAAGGAGGAGCTCGAGCAAGCGCTGAGGGAGAAAGGTCTTCTCGATGGCAGAGACATCAAAGACATCATATCAGAAGTCGACGCCGATAAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcgccggcgtgaaaccttagctgctctggccgtctcgtggcttactggctgcagGTGCATCTCCAAGGAGGAGCTGGAGCAGGCGCTCAAGGAGAAGGGGCTCCTGGACGGCAGGGACATCAAGGACATCATCTCGGAGGTCGACGCCGACAAC
                                       ggcttac  putative branch site (score: 3)