1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcaatatcatctatttaaaccattcggtatgtgcaacattgcatttgtcatcctcaagtatttttctcttcatggcagGGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCCATCCGAACCCACCCCTGCTGTAAGAGGATCTGCAGGTTCCTGTCCAGGT
species | Zea mays |
transcript | AC166636.1_FGT009 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGATCCTTACGCAAACTATGTCATTAACACCGCCCTTAACAACACCAGG GGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCCEST: gi|111190494|gb|EE288630.1|EE288630
genomic: CAGATCCTTACGCAAACTATGTCATTAACACCGCCCTTAACAACACCAGGgtatgcaata ... ttcatggcagGGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCC
EST: CAGATCCTTACGCAAACTATGTCATTAACACCGCCCTTAACAACACCAGG GGCCATTTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCC
genomic: CAGATCCTTACGCAAACTATGTCATTAACACCGCCCTTAACAACACCAGGgtatgcaata ... ttcatggcagGGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCC
tcggtatgtgcaacattgcatttgtcatcctcaagtatttttctcttcatggcagGGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCCATCCGAACCCACCCCTGCTGTAAGAGGATCTGCAGGTTCCTGTCCAGGT
tatttttctcttcat CT-rich tract
aagtattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaatatcatctatttaaaccattcggtatgtgcaacattgcatttgtcatcctcaagtatttttctcttcatggcagGGCCATCTGCTCAATGCCCTTGTTGAAGCGATCCGCCCTCATGAGGATGCCATCCGAACCCACCCCTGCTGTAAGAGGATCTGCAGGTTCCTGTCCAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG