1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaactccctacttacaatttcttcagtgtttgaattagtagtgaaacattgtctagggaaccatgatctcattttcaaagttacagtccatttattggatattctttggtgcaaacatatacttcttctatttctcttgaatccactgattgcctttgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTG
species | Zea mays |
transcript | AC155434.2_FGT003 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATCTTGCATTCACCATAGCAAACAAGACTTTCACCTTAACACCAGAGCAG TACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTEST: gi|211357458|gb|FL472116.1|FL472116
genomic: ATCTTGCATTCACCATAGCAAATAAGACTTTCACCTTAACACCAGAGCAGgtaactccct ... tgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTT
EST: ATCTTGCATTCACCATAGCAAACAAGACTTTCACCTTAACACCAGAGCAG TACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTEST: gi|211047514|gb|FL475118.1|FL475118
genomic: ATCTTGCATTCACCATAGCAAATAAGACTTTCACCTTAACACCAGAGCAGgtaactccct ... tgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTT
EST: ATCTTGCATTCACCATAGCAAACAAGACTTTCACCTTAACACCAGAGCAG TACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTEST: gi|211026213|gb|FL452157.1|FL452157
genomic: ATCTTGCATTCACCATAGCAAATAAGACTTTCACCTTAACACCAGAGCAGgtaactccct ... tgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTT
EST: ATCTTGCATTCACCATAGCAAACAAGACTTTCACCTTAACACCAGAGCAG TACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTEST: gi|16377663|gb|BI992044.1|BI992044
genomic: ATCTTGCATTCACCATAGCAAATAAGACTTTCACCTTAACACCAGAGCAGgtaactccct ... tgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTT
EST: ATCTTGCATTCACCATAGCAAACAAGACTTTCACCTTAACACCAGAGCAG TACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTT
genomic: ATCTTGCATTCACCATAGCAAATAAGACTTTCACCTTAACACCAGAGCAGgtaactccct ... tgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTT
caaacatatacttcttctatttctcttgaatccactgattgcctttgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTG
cactgat putative branch site (score: 278)
ttgccttt CT-rich tract
atatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactccctacttacaatttcttcagtgtttgaattagtagtgaaacattgtctagggaaccatgatctcattttcaaagttacagtccatttattggatattctttggtgcaaacatatacttcttctatttctcttgaatccactgattgcctttgtgctgcagTACATAGTGAAGCTGGAGCAAGCAGGACAAACTATCTGCATCAGTGGGTTTATGGCATTTGACGTACCGCCTCCTCGTGGTCCTCTCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC