1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acacattgttggcatttttagattggttttcaagaataaataaacaagataaaaaactgcatgtagctctgtcggattgatgattttttatcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAACGTGGATGTCTCTTTGTCGAGAGTAGTGCTAAAACAAGAGAAAACGTGG
species | Zea mays |
transcript | AC149818.2_FGT001 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAG GATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGAATTTGCACAAGAAEST: gi|71435756|gb|DR816806.1|DR816806
genomic: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAGgtatactatt ... tcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAA
EST: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAG GATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAAEST: gi|211356336|gb|FL310955.1|FL310955
genomic: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAGgtatactatt ... tcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAA
EST: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAG GATGAGGACAGAATGGTGACAAAAGAAGAAGGEST: gi|38229757|gb|CF920070.1|CF920070
genomic: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAGgtatactatt ... tcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGG
EST: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAG GATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAAEST: gi|6095558|gb|AW120225.1|AW120225
genomic: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAGgtatactatt ... tcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAA
EST: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAG GATGAGGACAGAATGGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAEST: gi|101382471|gb|EB813291.1|EB813291
genomic: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAGgtatactatt ... tcttgtatagGATGAGGACAGAATGG-TGACAAAAGAAGAAGGTCTTGCATTTGCACAAGA
EST: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAG GATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAA
genomic: CAACAAATAAGGAATGCATCAAAATGCTTGTTGGAAATAAAGTGGACAAGgtatactatt ... tcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAA
aagataaaaaactgcatgtagctctgtcggattgatgattttttatcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAACGTGGATGTCTCTTTGTCGAGAGTAGTGCTAAAACAAGAGAAAACGTGG
gattgat putative branch site (score: 80)
ttttttatctt putative PPT
attttttatcttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acacattgttggcatttttagattggttttcaagaataaataaacaagataaaaaactgcatgtagctctgtcggattgatgattttttatcttgtatagGATGAGGACAGAATGGTGACAAAAGAAGAAGGTCTTGCATTTGCACAAGAACGTGGATGTCTCTTTGTCGAGAGTAGTGCTAAAACAAGAGAAAACGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - tgttggc
- - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgatg