1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' | 34 5' 3' |
...gacaagccctaagcagtttaaacaatcctggataatgctatgattgaacgtgtacggtaacactgcttgattaatctcacacatgatctcaacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGTGGCCGAAGTATCCAAGACTTATCATTTGGTTAAAAGGTCAACACAAATG
species | Zea mays |
transcript | GRMZM2G057402_T01 |
intron # | 33 |
splice site | 3' |
intron type | U2 |
EST: ACTCGGCAATTGACAAAGCTTATAAAGCTTACGGTCCAAACTCGTTGAAG GAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGTEST: gi|485690|gb|T18760.1|T18760
genomic: ACTCGGCAATTGACAAAGCTTATAAAGCTTACGGTCCAAACTCGTTGAAGgtatgtgaag ... aacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGT
EST: ACTCGGCAATTGACAAAGCTTATAAAGCTTACGGTCCAAACTCGTTGAAG GAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGTEST: gi|6431743|gb|AW171947.1|AW171947
genomic: ACTCGGCAATTGACAAAGCTTATAAAGCTTACGGTCCAAACTCGTTGAAGgtatgtgaag ... aacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGT
EST: ACTCGGCAATTGNCAAAGCTTATAAAGCTTACGGTCCAAACTCGTTGAAG GAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGTEST: gi|166448508|gb|EG170060.1|EG170060
genomic: ACTCGGCAATTGACAAAGCTTATAAAGCTTACGGTCCAAACTCGTTGAAGgtatgtgaag ... aacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGT
EST: TCGGCAATTGACAAAGCTTATAAAAGCTTACGGTCCAAACTCGTTGAAG GAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAAGTAG
genomic: TCGGCAATTGACAAAGCTTAT-AAAGCTTACGGTCCAAACTCGTTGAAGgtatgtgaag ... aacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATA-GTAG
gaacgtgtacggtaacactgcttgattaatctcacacatgatctcaacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGTGGCCGAAGTATCCAAGACTTATCATTTGGTTAAAAGGTCAACACAAATG
atctcac putative branch site (score: 3)
ttgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacaagccctaagcagtttaaacaatcctggataatgctatgattgaacgtgtacggtaacactgcttgattaatctcacacatgatctcaacatttcagGAATTCTTGAGATGGAAGGTACCAAGGCCATATGCCCCTCGCAATAGTAGTGGCCGAAGTATCCAAGACTTATCATTTGGTTAAAAGGTCAACACAAATG
- caagccc
- - - - - - - - - -aaacaat
- - - - - - - - - - - - - cctggat
- - - - - - - - - - - - - - - - - -tgctatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacatga