1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
gtaaggttttcatatgcttgctgatgaaattgatagaaccatgacacgtttctctccctctattgcgcctgatcattcccttatttgctctgcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTGGGAGAATTCTTTGCATGCTGCTGTATCTGCAAGGGGAGCAAACAAG
species | Zea mays |
transcript | GRMZM2G140328_T03 |
intron # | 32 |
splice site | 3' |
intron type | U2 |
EST: AGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGG CTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTEST: gi|32938257|gb|CF043076.1|CF043076
genomic: AGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGGgtaaggtttt ... tgctctgcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATT
EST: AGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGG CTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTEST: gi|166590652|gb|EG053033.1|EG053033
genomic: AGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGGgtaaggtttt ... tgctctgcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATT
EST: AGGCTAAGTTGGCAGCTGTGGTTGGTATCTATAGGTCTTGCTTTCTTCGG CTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTEST: gi|67041185|gb|CO467440.1|CO467440
genomic: AGGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTTGCTTTCTTCGGgtaaggtttt ... tgctctgcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATT
EST: GGCTAAGTTGGCAGCTGTGGTTGGTATCGATAGGTCTTTGCTTTCT-CAA CTGGGCGCTGGCATTC
genomic: GGCTAAGTTGGCAGTTGTGGTTGGTATCGATAGGTCTT-GCTTTCTTCGGgtaaggtttt ... tgctctgcagCTGGCCGCTGGCATTC
atgacacgtttctctccctctattgcgcctgatcattcccttatttgctctgcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTGGGAGAATTCTTTGCATGCTGCTGTATCTGCAAGGGGAGCAAACAAG
gcctgat putative branch site (score: 4)
ttcccttatttgctct putative PPT
ttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggttttcatatgcttgctgatgaaattgatagaaccatgacacgtttctctccctctattgcgcctgatcattcccttatttgctctgcagCTGGCCGCTGGCATTCGTGGGGAAGCTTATTCCTGTTCCTAAACGTCCATTGGGAGAATTCTTTGCATGCTGCTGTATCTGCAAGGGGAGCAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA