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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgcgttttagcttttgcttagaaaagatgtttctgcctttttgtctaatgcggctccggagctttatacaacaaacgcagtagtggcctgacatgtgtaattttgtcttcttagGTGTTCAACGAATTCAATTCGCGTAAACCAGATGAGCTGAATATATTCAAGGGCATTTCAGGGAACCATCTGTTTATTGGCATCATAGCTATAACAGTTG

Basic information

species Zea mays
transcript GRMZM2G140328_T03
intron # 30
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140328_T03 (Zea mays), 3'ss of exon 30
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 3'ss of exon 30
-------------gttctgcgttttagcttttgcttagaaaagatgttt-ctgcctttttgtctaatgcggctc-cggagctttata-caacaaacgcagtagtggcctgacatg---------tgtaattttgtc-ttcttagGTGTTCAACGAATTCAATTCGCGTAAACCAGATGAGCTGAATATATTCAAGGGCATTTCAGGGAACCATCTGTTTATTGGCATCATAGCTATAACAGTTG
             ||| | |  |||  |||||    |             |  ||   ||  || |||  |||  |     |||||| |||  ||            || || |            ||||  | || | || |||||||||| ||||||||| |  | || || ||||||||||| ||||||||||||||| | ||||||||||| ||||| | |||  | || ||||||||||
gtgagttaccactgttttactatttctcttttaaccacccccctcccccgccccccagtttcctcatgtagcttacatccatttatatcaatgaaatggtctaccttctcacgtaaaaaaaaaacataatactttcatcctcagGTGTTCAATGAATTCAATGCTAGGAAGCCCGATGAGCTGAACATATTCAAGGGCATTACTGGGAACCATCTCTTTATGGCCATTGTTGCCATAACAGTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67041185|gb|CO467440.1|CO467440
EST:     CAGATAAAGTGAAAAATACCTTCATTTTCAACACATTTGTTCTCTGCCAG                         GTGTTCAACGAATTCAATTCGCGTAAACCAGATGAGCTGAATATATTCAAG
genomic: CAGATAAAGTGAAAAATACCTTCATTTTCAACACATTTGTTCTCTGCCAGgttctgcgtt ... gtcttcttagGTGTTCAACGAATTCAATTCGCGTAAACCAGATGAGCTGAATATATTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctttatacaacaaacgcagtagtggcctgacatgtgtaattttgtcttcttagGTGTTCAACGAATTCAATTCGCGTAAACCAGATGAGCTGAATATATTCAAGGGCATTTCAGGGAACCATCTGTTTATTGGCATCATAGCTATAACAGTTG
                          gcctgac  putative branch site (score: 3)
                                         ttttgtcttctt  putative PPT
                                    tgtaatttt  TA-rich tract