Sequence
atgc intronic sequence ATGC exonic sequencegttcaatcctgttttctgttttctttcttttactatgcttatgcatgtatttggcttaccaaatgccggatatgtaaaaataaaagtcaccatgttttgatttgttctctttctgaaaacttttgatttgtattctccagGATAGCAAAGGTGTGGAAGACTTTGGGGATGTCATAAGAGATGGAGGTGGTGCTCTTGCAAAAGGCATCTTCAGAGGTGTCACAGGCATATTGACAAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G057402_T02 (Zea mays), 3'ss of exon 30
lower sequence: LOC_Os02g27110.1 (Oryza sativa), 3'ss of exon 38
gttcaatcctgttttctgttttctttcttttactatgcttatgcatgtatttggcttaccaaatgccggatatgtaaaaataaaagtcaccatgttttgatttgttctctttctgaaaacttttgatttgtattctccagGATAGCAAAGGTGTGGAAGACTTTGGGGATGTCATAAGAGATGGAGGTGGTGCTCTTGCAAAAGGCATCTTCAGAGGTGTCACAGGCATATTGACAAAGC
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----------------------gttcatttctttctacgtatgcatgtattgaactgtataaaagtag--tatgttatgataacatgtactttgt---ggttcgtaatgtttct----------------------ccagGATAGCAAAGGAGTGGAAGACTTTGGTGATGTCATACGAGATGGAGGTGGGGCTCTCGCAAAGGGCATCTTCAGAGGTGTTACAGGCATATTGACAAAGC
upper sequence: GRMZM2G057402_T02 (Zea mays), 3'ss of exon 30
lower sequence: AT1G48090.1 (Arabidopsis thaliana), 3'ss of exon 62
gttcaatcctgttttctgttttctttcttttactatgcttatgcatgtatttggcttaccaaatgccggatatgtaaaaata--aaagtcaccatgttttgatttgttctctttctgaaaacttttg-atttgt--attctccagGATAGCAAAGGTGTGGAAGACTTTGGGGATGTCATAAGAGATGGAGGTGGTGCTCTTGCAAAAGGCATCTTCAGAGGTGTCACAGGCATATTGACAAAGC
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-----------------------------------------tgaatggcttctgat-actaaa---cggatgtatgggcttgccagtgtttctttcctgtgctccattttgttagtacacgctaatgcgtttcttgatttggcagGAAAACAAAGGTGTTGAGGACTTTGGCGATATTATCAGAGAAGGAGGTGGAGCTCTAGCGAAAGGCCTGTTTAGAGGAGTCACAGGCATATTGACAAAGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76016121|gb|DT943291.1|DT943291EST: TAGCTGCATTGTCTATGGACAAGAAATTCATTCAGGGCCGGATGAGACAG GATAGCAAAGGTGTGGAAGACTTTGGGGATGTCATAAGAGATGGAGGTGGT
genomic: TAGCTGCATTGTCTATGGACAAGAAATTCATTCAGGGCCGGATGAGACAGgttcaatcct ... tattctccagGATAGCAAAGGTGTGGAAGACTTTGGGGATGTCATAAGAGATGGAGGTGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcaccatgttttgatttgttctctttctgaaaacttttgatttgtattctccagGATAGCAAAGGTGTGGAAGACTTTGGGGATGTCATAAGAGATGGAGGTGGTGCTCTTGCAAAAGGCATCTTCAGAGGTGTCACAGGCATATTGACAAAGC
ttttgat putative branch site (score: 4)
tattctcc putative PPT
aaaacttttgattt TA-rich tract