Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttgatttttgttacatgtaatgctgatacattaccagtgatttttgttgcacttgagttttgcgctgttacatgtaatgctgatacattgagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT

Basic information

species Zea mays
transcript GRMZM5G898768_T02
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G898768_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g42395.2 (Oryza sativa), 3'ss of exon 3
--cttgatttttgttacatgtaatgctgatacattaccagtgatttttgttgcacttgagttttgcgctgttacatgtaatgctgatac--attgagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT
    || |  |||| |||| |  | |   |   ||   | |  |  |   ||| |   || | || | ||  |   || |  ||  | |   |||| |  |||||| || |||||||| ||  ||| | |||| ||||||||||||||||||||||||||||| || |||||||||||||| |||     |  |   | |  ||
gtggtggtgattgtgacatat--tacaactctgttcagaatcctagtatctgc-cacaagctgtg-gatgcaatcagtcactctttttcccgttgaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACCCAAGCTGTGGTCACAGGTGGAGGGATTGACGGCAAGGTTCATGGTGCT

upper sequence: GRMZM5G898768_T02 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os07g42395.1 (Oryza sativa), 3'ss of exon 3
--cttgatttttgttacatgtaatgctgatacattaccagtgatttttgttgcacttgagttttgcgctgttacatgtaatgctgatac--attgagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT
    || |  |||| |||| |  | |   |   ||   | |  |  |   ||| |   || | || | ||  |   || |  ||  | |   |||| |  |||||| || |||||||| ||  ||| | |||| ||||||||||||||||||||||||||||| || |||||||||||||| |||                   
gtggtggtgattgtgacatat--tacaactctgttcagaatcctagtatctgc-cacaagctgtg-gatgcaatcagtcactctttttcccgttgaacttgcagGCTCCAACTAAGGGGGAGAAAGGCCTGACACTGTACTTCATCTGCTGCAACCCAAGCTGTGGTCACAGGTGGAGGGATTGA-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16927217|gb|BM080286.1|BM080286
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211539734|gb|FL414674.1|FL414674
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211204410|gb|FL049977.1|FL049977
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|40334709|gb|CK368779.1|CK368779
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201849|gb|FL049973.1|FL049973
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|60344402|gb|DN211375.1|DN211375
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211539437|gb|FL405545.1|FL405545
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|61119761|gb|DN560722.1|DN560722
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|33096834|gb|CF056794.1|CF056794
EST:     GAAGCGTAAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCACGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211045484|gb|FL401610.1|FL401610
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|213173803|gb|FM191819.1|FM191819
EST:     GAAGCGTAAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211512140|gb|FL430406.1|FL430406
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|67028807|gb|CO457556.1|CO457556
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211199296|gb|FL049957.1|FL049957
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|60341492|gb|DN208465.1|DN208465
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211518744|gb|FL408136.1|FL408136
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211101931|gb|FL477281.1|FL477281
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201839|gb|FL049963.1|FL049963
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|60349982|gb|DN216955.1|DN216955
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|44682200|gb|CK787248.1|CK787248
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201842|gb|FL049966.1|FL049966
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201837|gb|FL049961.1|FL049961
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211199293|gb|FL049954.1|FL049954
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|116827017|gb|EC870859.1|EC870859
EST:     GAAGCGTCAGATGTTACAACTGCAACCAGCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGATGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|113703234|gb|EE680738.1|EE680738
EST:     CTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: CTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|5688821|gb|AI941836.1|AI941836
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201840|gb|FL049964.1|FL049964
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211199295|gb|FL049956.1|FL049956
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211199297|gb|FL049958.1|FL049958
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|37378130|gb|CF625728.1|CF625728
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211531126|gb|FL427371.1|FL427371
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|60340937|gb|DN207910.1|DN207910
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATTTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211051392|gb|FL401174.1|FL401174
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAA
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAA-
EST: gi|211199294|gb|FL049955.1|FL049955
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|29130428|gb|CB381132.1|CB381132
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211390311|gb|FL404117.1|FL404117
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201847|gb|FL049971.1|FL049971
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211204408|gb|FL049975.1|FL049975
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|14245653|gb|BG874235.1|BG874235
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211204413|gb|FL049980.1|FL049980
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211238546|gb|FL399125.1|FL399125
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211348128|gb|FL378226.1|FL378226
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201843|gb|FL049967.1|FL049967
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|30031636|gb|CB833487.1|CB833487
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211189291|gb|FL377650.1|FL377650
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211287862|gb|FL375473.1|FL375473
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201844|gb|FL049968.1|FL049968
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCBGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTG
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTG
EST: gi|211204409|gb|FL049976.1|FL049976
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGGCGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211204407|gb|FL049974.1|FL049974
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201845|gb|FL049969.1|FL049969
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201846|gb|FL049970.1|FL049970
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|32862558|gb|CF002240.1|CF002240
EST:     GAAGCGTAAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|33096278|gb|CF056272.1|CF056272
EST:     GAAGCGTAAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCTG                         GCCCCGACTAAGGGAGAACAAGCCACGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|211201848|gb|FL049972.1|FL049972
EST:     TTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: TTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|37384420|gb|CF629280.1|CF629280
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|37379287|gb|CF626385.1|CF626385
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
EST: gi|30031637|gb|CB833488.1|CB833488
EST:     GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAG                         GCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC
genomic: GAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 721

CAAAGATGTCCTGAAGGATGCAGCAACTGATCCTAGCCTGCCTCGCACCAGAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 229

CAAAGATGTCCTGAAGGATGCAGCAACTGATCCTAGCCTGCCTCGCACCAGAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 166

CAAAGATGTCCTGAAGGATGCAGCAACTGATCCTAGCCTGCCTCGCACCAGAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 394

CAAAGATGTCCTGAAGGATGCAGCAACTGATCCTAGCCTGCCTCGCACCAGAAGCGTCAGATGTTACAACTGCAACCATCCAGAAGCTGCCTTTTTTCAGgtttgtaccc ... gagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgcacttgagttttgcgctgttacatgtaatgctgatacattgagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT
                                 tgctgat  putative branch site (score: 394)
                           atgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cttgatttttgttacatgtaatgctgatacattaccagtgatttttgttgcacttgagttttgcgctgttacatgtaatgctgatacattgagcccgcagGCCCCGACTAAGGGAGAACAAGCCATGACGCTGTACTTCATCTGCTGCAACCCAAGCTGCGGGCACAGGTGGAGGGACTGAGAAGGATCTGGCTTGGTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - ttttgtt
- - - - - - - catgtaa
- - - - - - - - - - -tgctgat
- - - - - - - - - - - - - - - - - - - - - - - - -gcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgctg