1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttgtgattttattttttacgttgactggtgtttcaactaacttatattccgtgacggcgatccacattataaattgtaatgtatgctgtatcattttagGTTTTTGCAAAGGCAATGGCGGAGACTGGGCAAATTAAAATTTTTGGGGACCATCCTTCACGGACAGAAGCTGCTCTTGCAAAGACAAGAAGACATTTGT
species | Zea mays |
transcript | GRMZM5G897926_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAGGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACG GTTTTTGCAAAAGGCAATGEST: gi|71311579|gb|DR792166.1|DR792166
genomic: AGGAGGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACGgttagttcct ... atcattttagGTTTTTGCAAA-GGCAATG
EST: AGGAGGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACG GTTTTTGCAAAGGCAATGGCGGAGACTGGGCAAGTTAAAATTTTTGGGGACEST: gi|211422189|gb|FL102544.1|FL102544
genomic: AGGAGGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACGgttagttcct ... atcattttagGTTTTTGCAAAGGCAATGGCGGAGACTGGGCAAATTAAAATTTTTGGGGAC
EST: AGGAAATGTGGTCAAGATGGCANAGGAGGCCGTCCCANATGTTGACCCCG GTTTTTGCAAAGGCAATGGEST: gi|211422197|gb|FL102552.1|FL102552
genomic: AGGAAATGTGGTCAAGATGGCAGAGGAGGC-GTCC-AGATGTTGACAC-Ggttagttcct ... atcattttagGTTTTTGCAAAGGCAATGG
EST: AGGAGGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACG GTTTTTGCAAAGGCAATGGCGGA
genomic: AGGAGGAAATGTGGTCAAGATGGCAGAGGAGGCGTCCAGATGTTGACACGgttagttcct ... atcattttagGTTTTTGCAAAGGCAATGGCGGA
tattccgtgacggcgatccacattataaattgtaatgtatgctgtatcattttagGTTTTTGCAAAGGCAATGGCGGAGACTGGGCAAATTAAAATTTTTGGGGACCATCCTTCACGGACAGAAGCTGCTCTTGCAAAGACAAGAAGACATTTGT
tcatttt CT-rich tract
acattataaattgtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgattttattttttacgttgactggtgtttcaactaacttatattccgtgacggcgatccacattataaattgtaatgtatgctgtatcattttagGTTTTTGCAAAGGCAATGGCGGAGACTGGGCAAATTAAAATTTTTGGGGACCATCCTTCACGGACAGAAGCTGCTCTTGCAAAGACAAGAAGACATTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- tgtgatt
- - - - - - - - - - - tgactgg
- - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgc