1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttgaaccattcctgcatttcccttttccgtaactgaatttcttatgcagccgacctggatgtgccttgcttatgctagcaattttctccacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGGAGCTCATTGGCAGTAGGATACCGGATTCTCAGATTGTAGAAAATCTGG
species | Zea mays |
transcript | GRMZM5G897342_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|31349680|gb|CD434037.1|CD434037
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|32942636|gb|CF047455.1|CF047455
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|101398258|gb|EB821002.1|EB821002
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACEST: gi|56382517|gb|CV985186.1|CV985186
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTAC
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTGTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|29946845|gb|CB816354.1|CB816354
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|37383739|gb|CF628900.1|CF628900
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|32834618|gb|CD974296.1|CD974296
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|24763701|gb|CA398872.1|CA398872
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|213171748|gb|FM196206.1|FM196206
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|14203675|gb|BG837352.1|BG837352
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|213192800|gb|FM186079.1|FM186079
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGGAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|78122045|gb|DV540429.1|DV540429
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|76923684|gb|DV169607.1|DV169607
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|24764209|gb|CA399375.1|CA399375
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|37376649|gb|CF624876.1|CF624876
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|166528496|gb|EG045154.1|EG045154
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGEST: gi|29945799|gb|CB815825.1|CB815825
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|24763702|gb|CA398873.1|CA398873
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGEST: gi|37400793|gb|CF637756.1|CF637756
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
EST: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTG GTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
genomic: CATTTCTACAGAGTTCTGGTGCCTTTGAAGTTTATTGCAACGGGCAACTGgtaggttcct ... cacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAG
atgcagccgacctggatgtgccttgcttatgctagcaattttctccacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGGAGCTCATTGGCAGTAGGATACCGGATTCTCAGATTGTAGAAAATCTGG
ttttctccacttttc CT-rich tract
aattttct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgaaccattcctgcatttcccttttccgtaactgaatttcttatgcagccgacctggatgtgccttgcttatgctagcaattttctccacttttcagGTTTTCTCCAAACTGTCTGAGCAGAGGTTTCCTAGTGAACTTGAGCTACAGGAGCTCATTGGCAGTAGGATACCGGATTCTCAGATTGTAGAAAATCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- -tgaacca
- - - - - -tcctgca
- - - - - - - - - - - - - - - - aactgaa
- - - - - - - - - - - - - - - - - - - - - - - tgcagcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ctggatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctagc