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gtttggcgccatttacgcaccctgagaaagaatatcactcctcatattttgtgatacatgtttttgtttcttagcacaaagggttaaatgaatgtgttgtccgcgccattgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAATCTCAGTGGAGAATCT
species | Zea mays |
transcript | GRMZM5G896731_T03 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|89248113|gb|DY619899.1|DY619899
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|78109136|gb|DV527553.1|DV527553
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCCTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|88756830|gb|DY540971.1|DY540971
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|89250808|gb|DY622594.1|DY622594
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|91050003|gb|EB160421.1|EB160421
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|78109135|gb|DV527552.1|DV527552
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTATTTCAAAGCACTCCTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|76293027|gb|DV032595.1|DV032595
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|91053266|gb|EB163684.1|EB163684
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAEST: gi|78085320|gb|DV513713.1|DV513713
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
EST: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAG GGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
genomic: CCAGGGTATACCCCTGACTACACATTACTTCAAAGCACTCTTTGGTGAAGgtttggcgcc ... attgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGA
tttgtttcttagcacaaagggttaaatgaatgtgttgtccgcgccattgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAATCTCAGTGGAGAATCT
cattgat putative branch site (score: 4)
ttaaatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttggcgccatttacgcaccctgagaaagaatatcactcctcatattttgtgatacatgtttttgtttcttagcacaaagggttaaatgaatgtgttgtccgcgccattgattcagGGATGGTTGATGGAGTCCCTGTTCTTCTTGCCAAGCCCCAGACTTATATGAATCTCAGTGGAGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA