1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcctatacatttcatatgatttatctcgagatcatgtaatggtcgtctacaattatcagtatctcttttgctgtagctaacctactgtttgtttccagATTTGTAAGAGGGAAGGTACCTGGTCTTAATACTGGGTTTGACATAGATGAAGCTGATCATTCTGAGATGCAGCTGTGCCAGAGTACAGTTGTTGCCTCT
species | Zea mays |
transcript | GRMZM5G891056_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGAGTGTACATTGTGG ATTTGTAAGAGGGAAGGTACCTGGTEST: gi|211516003|gb|FL160569.1|FL160569
genomic: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctat ... ttgtttccagATTTGTAAGAGGGAAGGTACCTGGT
EST: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGAGTGTACATTGTGG ATTTGTAAGAGGGAEST: gi|211516006|gb|FL160572.1|FL160572
genomic: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctat ... ttgtttccagATTTGTAAGAGGGA
EST: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGAGTGTACATTGTGG ATTTGTCAGAGCGAAGGEST: gi|211516012|gb|FL160578.1|FL160578
genomic: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctat ... ttgtttccagATTTGTAAGAGGGAAGG
EST: AACGAGANTA-GTCTTATGACATAAAAGACTCGATGAGTGTACATTGTGG ATTTGTAAGAGGGAAGGTACCTGGTCTTAATACTGGGTTTGACATAGATGAEST: gi|211516002|gb|FL160568.1|FL160568
genomic: AACGAGA-TAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctat ... ttgtttccagATTTGTAAGAGGGAAGGTACCTGGTCTTAATACTGGGTTTGACATAGATGA
EST: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGAGTGTACATTGTGG ATTTGTAAGAGGGA
genomic: GAACGAGATAAGTCTTATGACATAAAAGACTCGATGACTGTACATTGTGGgtatgcctat ... ttgtttccagATTTGTAAGAGGGA
cgtctacaattatcagtatctcttttgctgtagctaacctactgtttgtttccagATTTGTAAGAGGGAAGGTACCTGGTCTTAATACTGGGTTTGACATAGATGAAGCTGATCATTCTGAGATGCAGCTGTGCCAGAGTACAGTTGTTGCCTCT
agctaac putative branch site (score: 22)
tttgtttcc putative PPT
acaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcctatacatttcatatgatttatctcgagatcatgtaatggtcgtctacaattatcagtatctcttttgctgtagctaacctactgtttgtttccagATTTGTAAGAGGGAAGGTACCTGGTCTTAATACTGGGTTTGACATAGATGAAGCTGATCATTCTGAGATGCAGCTGTGCCAGAGTACAGTTGTTGCCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG