1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gaagtgataggatcaagcatagagatgaatagaatcgcacattgtaagcagcatgtaattgtttggtgcattaaacataattttctgaatgattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG
species | Zea mays |
transcript | GRMZM5G883149_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCAEST: gi|78087242|gb|DV515635.1|DV515635
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
EST: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGG GATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
genomic: GAGAATTTGGACCTGATCCTATTGTGTCTTGATGAAATTGTTGATGGAGGgtaaagcctt ... gattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCA
aagcagcatgtaattgtttggtgcattaaacataattttctgaatgattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG
attaaacataattttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaagtgataggatcaagcatagagatgaatagaatcgcacattgtaagcagcatgtaattgtttggtgcattaaacataattttctgaatgattacacagGATTGTACTTGAAACAGAAGGAAGAGAGATAGCTGAAAAGGTGTCTGGTCACGGATCGGAGGGTGCTTCATCGGCTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - -caagcat
- - - - - - - - - - - - - gaatagaa
- - - - - - - - - - - - - - - - - - gcacatt
- - - - - - - - - - - - - - - - - - - - - - - - - gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacata