1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttacatgcagagatgagattcaagaatatttatattaaacattgaagcacctaacttgtgataaaactaggcataacctgaagcttattgatgtatctttttagctgccatctcttcttatcattttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG
species | Zea mays |
transcript | GRMZM5G880300_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGTGNGAACCCAGTCTTGATCTACATGAAGGGTEST: gi|211071256|gb|FL399022.1|FL399022
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAG-GAGAACCCAGTCTTGATCTACATGAAGGGT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|74236784|gb|DT644698.1|DT644698
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|211479938|gb|FL425914.1|FL425914
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|91877551|gb|EB407508.1|EB407508
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|211159736|gb|FL393706.1|FL393706
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGEST: gi|93017644|gb|EB643164.1|EB643164
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATG
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|76281315|gb|DV020883.1|DV020883
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|211148655|gb|FL387728.1|FL387728
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCARACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|211243072|gb|FL400459.1|FL400459
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|84980275|gb|DW530624.1|DW530624
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|211069174|gb|FL417736.1|FL417736
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|101389214|gb|EB816562.1|EB816562
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|93017643|gb|EB643163.1|EB643163
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTEST: gi|84980198|gb|DW530547.1|DW530547
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
EST: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAG GATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
genomic: AGCCAAAGAGCAGAATTTCAGACATGACTTTGCATGACGCTATTGCTCAGgtatttacat ... ttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCT
aagcttattgatgtatctttttagctgccatctcttcttatcattttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG
tattgat putative branch site (score: 28)
ccatctcttcttatca putative PPT
tatcttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttacatgcagagatgagattcaagaatatttatattaaacattgaagcacctaacttgtgataaaactaggcataacctgaagcttattgatgtatctttttagctgccatctcttcttatcattttcttggtagGATATCAAGGAGAACCCAGTCTTGATCTACATGAAGGGTTTTCCTGAGTCTCCAATGTGTGGCTTCAGTGCACTGGCTGTTAAGGTCTTCCAGCAATATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT