1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...atacagcaaagccaacgatgaagtagttagcacatatcttttttactttgatcatgacagagcatgattataactgaattggttcctttttctggtttagCTCCGTGGTCGAAGTGGAAGACAGGGGGATCCTGGAAGCTCTCGCTTCTTTCTTAGTCTCGAGGATAATATTTTCCGGATCTTTGGAGGTGACAGGATAC
species | Zea mays |
transcript | GRMZM5G880102_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCACGTAGTAGGAACAGAGCGCCATGAATCACGCAGAATTGACAATCAG CTCCGTGGTCGAAGTGGAAGACAGGGGGATCCTGGAAGCTCTCGCTTCTTT
genomic: TTCACGTAGTAGGAACAGAGCGCCATGAATCACGCAGAATTGACAATCAGgtaatatact ... tctggtttagCTCCGTGGTCGAAGTGGAAGACAGGGGGATCCTGGAAGCTCTCGCTTCTTT
ctttgatcatgacagagcatgattataactgaattggttcctttttctggtttagCTCCGTGGTCGAAGTGGAAGACAGGGGGATCCTGGAAGCTCTCGCTTCTTTCTTAGTCTCGAGGATAATATTTTCCGGATCTTTGGAGGTGACAGGATAC
ttataac putative branch site (score: 113)
ttcctttttctggttt putative PPT
attataactgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atacagcaaagccaacgatgaagtagttagcacatatcttttttactttgatcatgacagagcatgattataactgaattggttcctttttctggtttagCTCCGTGGTCGAAGTGGAAGACAGGGGGATCCTGGAAGCTCTCGCTTCTTTCTTAGTCTCGAGGATAATATTTTCCGGATCTTTGGAGGTGACAGGATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- -cagcaaa
- - - - - -ccaacga
- - - - - - - - - - - - - - -gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - catgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gagcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaattg