Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaggccccccagtctcttgctgttgtgccatatggtgcttgtgattatttaattaattcgtttcgttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG

Basic information

species Zea mays
transcript GRMZM5G872417_T01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G872417_T01 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os05g51650.1 (Oryza sativa), 3'ss of exon 2
-------gtaagcaaggccccccagtctcttgctgttgtgccatatggtgcttgtgattatttaattaattcgtttcgttgatgc------agGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG
           |   |  |  |  ||       | ||||    | |||  || |  | || | | |  | | |    |     ||      |||| || ||||| ||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||  | |
gtgagccccttgtttgatctactcgtacaccttttttgttttttttggctctcgctaatactcactcgaattgccctgcctccgcttcgtcagGGGACACTCAGAGGATTCGATCAAGCCACCAACATCATCCTCGATGAGTCCCATGAGAGGGTCTATTCTACCAGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60352709|gb|DN219682.1|DN219682
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|71309944|gb|DR791257.1|DR791257
EST:     GCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: GCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|78545121|gb|DV622619.1|DV622619
EST:     AGGTCATTTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|60346643|gb|DN213616.1|DN213616
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|60338206|gb|DN205179.1|DN205179
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211108839|gb|FL459273.1|FL459273
EST:     TCGACCAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: TCGACCAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|71309946|gb|DR791258.1|DR791258
EST:     GCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: GCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|93011979|gb|EB637499.1|EB637499
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|32908532|gb|CF013345.1|CF013345
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211064740|gb|FL117481.1|FL117481
EST:     AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCAC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCAC
EST: gi|211478436|gb|FL475434.1|FL475434
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211119264|gb|FL172295.1|FL172295
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|31405969|gb|CD484701.1|CD484701
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211118481|gb|FL172294.1|FL172294
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGA-GAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|88757353|gb|DY541494.1|DY541494
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|26456923|gb|CA828506.1|CA828506
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|9254635|gb|BE345103.1|BE345103
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|60348947|gb|DN215920.1|DN215920
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211070213|gb|FL117508.1|FL117508
EST:     AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTN                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGT
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGT
EST: gi|9254766|gb|BE345234.1|BE345234
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211064741|gb|FL117482.1|FL117482
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211119267|gb|FL172298.1|FL172298
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GNGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagG-GTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTC
EST: gi|211064742|gb|FL117483.1|FL117483
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACG
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGG-TACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACG
EST: gi|211067474|gb|FL117494.1|FL117494
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGAT
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGAT
EST: gi|26456102|gb|CA827685.1|CA827685
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGCG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211064749|gb|FL117490.1|FL117490
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|20811135|gb|BQ295613.1|BQ295613
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211067475|gb|FL117495.1|FL117495
EST:     AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACAT
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACAT
EST: gi|211067476|gb|FL117496.1|FL117496
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GAGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagG-GTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTC
EST: gi|78544371|gb|DV621869.1|DV621869
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211064743|gb|FL117484.1|FL117484
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTC
EST: gi|211119265|gb|FL172296.1|FL172296
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211119266|gb|FL172297.1|FL172297
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|19770275|gb|BQ034996.1|BQ034996
EST:     TCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: TCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|31557971|gb|CD527183.1|CD527183
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|5343084|gb|AI795494.1|AI795494
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|23199819|gb|BU582384.1|BU582384
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|78544396|gb|DV621894.1|DV621894
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|17930348|gb|BM267308.1|BM267308
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|45567457|gb|CK985581.1|CK985581
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|37378013|gb|CF625658.1|CF625658
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211067473|gb|FL117493.1|FL117493
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|19770274|gb|BQ034995.1|BQ034995
EST:     GACCAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: GACCAGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|60358027|gb|DN225000.1|DN225000
EST:     AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTG                         GGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCC
EST: gi|211475593|gb|FL117472.1|FL117472
EST:     AGGTCATCTCCCTCATCACCAACGATGGCCGCAACATCGTG                         GGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATA
genomic: AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGG-TACGCTCAGGGGATTCGATCAGGCCACCAACATTATA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 276

AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG


Block sizes: 41 (upstream exon), 49 (downstream exon)
Score: 145

AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 153

AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG


Block sizes: 41 (upstream exon), 48 (downstream exon)
Score: 112

AGGTCATCTCCGTCATCACCAACGATGGCCGCAACATCGTGgtaagcaagg ... gttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgtgccatatggtgcttgtgattatttaattaattcgtttcgttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG
                                         tttcgtt  CT-rich tract
                      tgattatttaattaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaagcaaggccccccagtctcttgctgttgtgccatatggtgcttgtgattatttaattaattcgtttcgttgatgcagGGTACGCTCAGGGGATTCGATCAGGCCACCAACATTATACTCGACGAGTCCCATGAGAGGGTCTATTCTAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG