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gtaactactgatttcattcatcattttgtttttatgatgggtaatgtgatgcaattaatttagtatttctatttctgcttaaacattctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATTCTGCAGTTATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG
species | Zea mays |
transcript | GRMZM5G871572_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTTATATGCCCACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACG GCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATEST: gi|22542475|gb|BU092913.1|BU092913
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACGgtaactactg ... ctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGAT
EST: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACG GCAGAACAACACTTCTTGAAGCACAACGATGCTGGTATCCTGGEST: gi|93012428|gb|EB637948.1|EB637948
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACGgtaactactg ... ctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGG-ATCCTGG
EST: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACG GCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATEST: gi|94474067|gb|EB703025.1|EB703025
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACGgtaactactg ... ctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGAT
EST: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACG GCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATEST: gi|149055712|gb|EE156420.2|EE156420
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACGgtaactactg ... ctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGAT
EST: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACG GCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATEST: gi|71432571|gb|DR813621.1|DR813621
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACGgtaactactg ... ctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGAT
EST: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACG GCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGAT
genomic: CACTTATATGCCAACAAAGCGGCATGAGAGGTGTGATCGTTGAGGAAACGgtaactactg ... ctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGAT
aatgtgatgcaattaatttagtatttctatttctgcttaaacattctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATTCTGCAGTTATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG
aattaat putative branch site (score: 55)
cattctctttct putative PPT
aattaatttagtattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactactgatttcattcatcattttgtttttatgatgggtaatgtgatgcaattaatttagtatttctatttctgcttaaacattctctttctagGCAGAACAACACTTCTTGAAGCACAACGATGCTGGATCCTGGATTCAAGATTCTGCAGTTATGCTTTCTGTTAGCAAAGAGGTTCCATGGTATCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG